235 commits

Author	SHA1	Message	Date
marcel-keller	8e3803e4d7	Update ebc.config	2020-03-09 16:57:45 +02:00
marcel-keller	c00bbe982b	Update ebc.config	2020-03-09 16:51:38 +02:00
marcel-keller	3b57519500	Update ebc.config	2020-03-09 16:48:50 +02:00
marcel-keller	de914e56ee	Create ebc.config	2020-03-09 16:08:01 +02:00
Evan Floden	d8ad376f71	Merge branch 'master' into master	2020-03-06 10:29:50 +00:00
Alexander Peltzer	59a787b179	Merge pull request #122 from marchoeppner/ccga-config ... Removing old CCGA profile from docs and linting	2020-03-06 11:17:08 +01:00
mseybold	52842de88b	Update cfc.config ... test failed, so added the the default queue	2020-03-06 10:46:37 +01:00
mseybold	8e42bbd7d0	Update cfc.config ... We just added some new HighMem nodes to the cfc, Partition/queue name is qbic, each node has 128Cores and 2TB of RAM. The old queue (Name compute) is set to default by slurm. Each process over 60GB of RAM or over 20cpus should run on those new nodes. So added the queue State and adjusted the max_memory and max_cpu setting.	2020-03-06 10:25:08 +01:00
Evan Floden	8a9d3ad8a0	First commit of Google Cloud config	2020-03-06 05:47:29 +00:00
phue	e2e4dd05d3	cbe: move container cache to different filesystem ... this is a workaround for squashfs errors that occur when containers are run from beeGFS	2020-03-05 16:34:20 +01:00
James A. Fellows Yates	41a45187fa	Experiment to see if 'cleanup = true' works as expected	2020-03-03 16:47:49 +01:00
Maxime Garcia	9a8bb12020	Update conf/pipeline/sarek/uppmax.config	2020-02-27 17:22:03 +01:00
Maxime Garcia	8acbdacf03	Update conf/pipeline/sarek/uppmax.config ... Co-Authored-By: Johannes Alneberg <johannes.alneberg@scilifelab.se>	2020-02-27 17:21:03 +01:00
Maxime Garcia	09ff8f5790	Update conf/pipeline/sarek/uppmax.config	2020-02-27 17:02:31 +01:00
Maxime Garcia	17d6a7e922	Update conf/pipeline/sarek/uppmax.config	2020-02-27 17:02:13 +01:00
Maxime Garcia	ab8998e12b	Update uppmax.config	2020-02-27 16:52:51 +01:00
MaxUlysse	a8d338d2aa	Merge branch 'Uppmax' of github.com:MaxUlysse/nf-core_configs into Uppmax	2020-02-24 14:37:27 +01:00
MaxUlysse	9f74e88041	update file	2020-02-24 14:36:45 +01:00
Marc Hoeppner	6c5a5c8bcb	Removing old CCGA profile from docs and linting ... Removing CCGA profile from master config Removing CCGA profile from master config	2020-02-24 12:16:33 +01:00
Maxime Garcia	9b897345da	Update conf/pipeline/sarek/uppmax.config ... Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>	2020-02-21 08:16:31 +01:00
Maxime Garcia	08e2804b37	Merge branch 'master' into Uppmax	2020-02-20 17:18:46 +01:00
MaxUlysse	aa905cd645	add UPPMAX specific sarek config	2020-02-20 17:14:18 +01:00
Daniel Straub	744db30da4	Update binac.config ... This is now close to optimal I think.	2020-02-19 11:27:02 +01:00
marchoeppner	0830203b70	Adding new CCGA Med Cluster to profiles ... Updating README and fixing linting errors in CCGA_MED profile Fixing order in profile queue and removed leading slash from readme for ccga profile docs Fixing order in profile queue and removed leading slash from readme for ccga profile docs	2020-02-11 11:12:51 +01:00
Daniel Straub	b7be65a31e	Cleanup config	2020-02-07 14:53:43 +01:00
Daniel Straub	7346bffdc8	Update binac.config ... Processes that ask for 128 Gb are queuing forever when on short queue, but executed when send to smp queue.	2020-01-28 08:48:34 +01:00
James A. Fellows Yates	638758423a	Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max	2019-12-21 20:55:54 +01:00
drpatelh	67c231d05c	Change igenomes path	2019-12-18 10:54:23 +00:00
drpatelh	089b5b8e3b	Update config	2019-12-12 13:44:37 +00:00
drpatelh	65c5668568	Update config	2019-12-12 13:02:44 +00:00
Maxime Garcia	d36172d4cf	Merge pull request #110 from MaxUlysse/MUNIN ... fix issue with withLabel selector	2019-12-12 13:03:23 +01:00
MaxUlysse	2bf66514c5	fix issue with withLabel selector	2019-12-12 11:50:10 +01:00
Alexander Peltzer	a6d08ed646	Adjust custom pipeline config for ampliseq on BINAC	2019-12-11 16:09:44 +01:00
Alexander Peltzer	49cd35918a	Remove whitespace	2019-12-11 15:59:58 +01:00
Alexander Peltzer	5e6981d0ee	Export TZ in binac config	2019-12-11 15:59:25 +01:00
Alexander Peltzer	ac90acf470	Update envWhiteList for Binac Profile for testing purposes ... Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114	2019-12-11 14:26:57 +01:00
James A. Fellows Yates	0beb98696f	Merge branch 'master' into master	2019-12-06 19:31:24 +01:00
James A. Fellows Yates	8747be8120	More tweaks, nextflow appears to add a little extra?	2019-12-06 19:27:16 +01:00
James A. Fellows Yates	5c6760b2f0	Tweak back again	2019-12-06 19:25:07 +01:00
James A. Fellows Yates	46f6d20a77	Put parameters back to correct levels	2019-12-06 19:13:29 +01:00
James A. Fellows Yates	18931763fa	Add space?	2019-12-06 19:11:08 +01:00
James A. Fellows Yates	f59443daf0	Update shh.config	2019-12-06 19:09:20 +01:00
James A. Fellows Yates	1ab1370872	Try to make resources satisfiable	2019-12-06 19:06:05 +01:00
James A. Fellows Yates	6e596d1730	Fix stupid wrong bracket typo -.-	2019-12-06 18:37:39 +01:00
James A. Fellows Yates	b28e1a0905	Wrong bracket typo fix -.-	2019-12-06 18:34:18 +01:00
Alexander Peltzer	1f7940c2ee	Merge pull request #104 from jfy133/master ... Attempt to fix process specific configs with pipeline specific configs	2019-12-06 17:16:37 +01:00
jfy133	e8b4675692	Cleanup and tweaking	2019-12-06 13:17:31 +01:00
Maxime Garcia	9497b78149	Merge pull request #100 from MaxUlysse/UPPMAX ... Improve UPPMAX configs	2019-12-06 10:52:44 +01:00
Maxime Garcia	14864bb80b	Update conf/uppmax.config	2019-12-06 10:31:56 +01:00
Alexander Peltzer	da547b4ce3	Merge pull request #102 from phue/cbe_singularity ... cbe: load singularity/3.4.1	2019-12-06 10:21:55 +01:00