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Author	SHA1	Message	Date
Phil Ewels	1f872aea87	Merge pull request #357 from mahesh-panchal/uppmax-hostname-fix ... Execute sinfo with bash shell	2022-03-25 15:31:09 +01:00
Mahesh Binzer-Panchal	3a7f7f431e	Execute sinfo with bash shell	2022-03-25 13:58:37 +00:00
Aida Andrades Valtueña	b9da0b4f00	Update eva.config ... Update eva.config to send big memory jobs (>700G) to the bigmem queue	2022-03-25 09:36:29 +01:00
Phil Ewels	7d72e8d94b	Merge pull request #356 from b97pla/uppmax_miarka_config ... removed process-specific requirements for sarek, request miarka high-…	2022-03-24 14:33:06 +01:00
b97pla	9a6cdfc21e	removed process-specific requirements for sarek, request miarka high-mem node	2022-03-24 14:25:43 +01:00
Phil Ewels	80ec4485b6	Merge pull request #355 from b97pla/uppmax_miarka_config ... added requirements for uppmax cluster miarka	2022-03-23 16:56:44 +01:00
b97pla	5466d927f1	added requirements for uppmax cluster miarka	2022-03-23 15:29:40 +01:00
Phil Ewels	2c18f8c5da	Merge pull request #354 from Emiller88/prettier	2022-03-23 12:31:41 +01:00
Edmund Miller	590045be31	ci: Run linting only once	2022-03-21 19:23:29 -05:00
Edmund Miller	ac6c08fbf4	style: yaml => yml	2022-03-21 19:23:29 -05:00
Edmund Miller	c909b36a5e	style: Allow editorconfig to manage tab widths	2022-03-21 19:23:29 -05:00
Edmund Miller	6c37bf3b20	style: Run prettier	2022-03-21 19:23:28 -05:00
Edmund Miller	58da86d729	ci: Use prettier	2022-03-21 19:13:59 -05:00
Edmund Miller	c42ab624c2	style: Replace markdownlint with prettier	2022-03-21 19:13:56 -05:00
James A. Fellows Yates	962d86d604	Merge pull request #346 from sagc-bioinformatics/sahmri ... Added SAHMRI profile	2022-03-18 13:01:36 +01:00
Nathan S. Watson-Haigh	30f710ada4	Add debug profile	2022-03-17 13:38:43 +10:30
Praveen Raj S	066a2181cb	Merge pull request #353 from nf-core/praveenraj2018-patch-1 ... Added PileupSummariesForMutect2 in CPU limit list	2022-03-16 14:39:43 +01:00
Praveen Raj S	1d4f254e43	Update munin.config	2022-03-16 14:37:28 +01:00
Praveen Raj S	9747d5fe15	Added PileupSummariesForMutect2 in CPU limit list ... Add PileupSummariesForMutect2 to the list to run with less threads. Changed the MaxForks to 12 Tested on an internal sample and it worked!	2022-03-16 14:36:25 +01:00
Alexander Peltzer	d510cb254e	Merge pull request #165 from ewels/fix-show-profiles ... Set params.custom_config_base in nextflow.config	2022-03-15 17:13:24 +01:00
Praveen Raj S	5828a48ef7	Merge pull request #351 from nf-core/praveenraj2018-patch-1 ... Adjusted time and maxforks for Mutect2	2022-03-15 17:00:09 +01:00
Praveen Raj S	a844335942	Update conf/munin.config ... Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>	2022-03-15 16:59:06 +01:00
Praveen Raj S	cb96c4bd2d	Update conf/munin.config ... Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>	2022-03-15 16:56:11 +01:00
Praveen Raj S	13c66f7e98	Update conf/munin.config ... Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>	2022-03-15 16:56:03 +01:00
Praveen Raj S	50c4610345	Adjusted time and maxforks for Mutect2	2022-03-15 16:29:19 +01:00
Alexander Peltzer	3e4fae71a4	Merge branch 'master' into fix-show-profiles	2022-03-15 14:52:29 +01:00
James A. Fellows Yates	47bb41a1d8	Merge pull request #348 from jfy133/eva-update ... Update eager @ eva to exclude slow nodes for mapping	2022-03-15 07:54:52 +01:00
James A. Fellows Yates	1b5037ce5e	Update eva.config	2022-03-15 07:49:06 +01:00
James A. Fellows Yates	1565b2ce63	Update eva.config	2022-03-15 07:42:23 +01:00
James A. Fellows Yates	f725b6c431	Apply suggestions from code review	2022-03-15 07:36:34 +01:00
Nathan S. Watson-Haigh	a0f5ac7445	Added references subdir to igenomes_base	2022-03-15 11:41:51 +10:30
James A. Fellows Yates	4670f8bf0c	Update eva.config	2022-03-14 14:56:01 +01:00
James A. Fellows Yates	a2e2e94333	Merge pull request #344 from njspix/vai ... Add VAI configuration	2022-03-14 14:36:00 +01:00
James A. Fellows Yates	a154738c5e	Merge pull request #347 from nf-core/pr-template-update ... Update PULL_REQUEST_TEMPLATE.md	2022-03-14 10:11:21 +01:00
James A. Fellows Yates	b7909c33c8	Update PULL_REQUEST_TEMPLATE.md	2022-03-14 08:27:10 +01:00
James A. Fellows Yates	30d9f82c65	Merge pull request #138 from Emiller88/pr-templates ... chore: add new config PR template	2022-03-14 08:06:09 +01:00
Nathan Watson-Haigh	cc55026751	Add singularity to PATH	2022-03-13 07:39:31 +10:30
Nathan Watson-Haigh	2f0b022571	Fixed typos	2022-03-13 00:08:42 +10:30
Nathan Watson-Haigh	dba3fb4c1d	Added SAHMRI HPC profile docs	2022-03-13 00:05:34 +10:30
Nathan Watson-Haigh	b58a9952be	Added SAHMRI HPC profile	2022-03-12 21:24:05 +10:30
Nathan Watson-Haigh	b638694bd0	Added SAHMRI HPC profile	2022-03-12 21:17:33 +10:30
Matiss	6c79c75eec	Merge pull request #290 from maxozo/master ... added leicester profile	2022-03-11 09:21:09 +00:00
Nathan Spix	d067f61329	remove extra spaces	2022-03-07 15:22:18 -05:00
Spix	17c77ad516	update singularity command	2022-03-07 15:13:26 -05:00
Spix	c97c48ae5b	update singularity command	2022-03-07 15:11:45 -05:00
Spix	429c7b4fa8	initial commit	2022-03-07 15:01:46 -05:00
Alexander Peltzer	d0d86bfb2a	Merge pull request #339 from jfy133/rnaseq_mpcdf ... Add RNASEQ specific config for MPCDF	2022-03-07 13:59:08 +01:00
James A. Fellows Yates	975fca6721	Apply suggestions from code review	2022-03-07 13:51:00 +01:00
Alexander Peltzer	5cde6f3886	Merge pull request #342 from zajacn/master ... Update on md file	2022-03-07 13:44:00 +01:00
Natalia Zajac	c2e0c9e6d4	Update on md file	2022-03-07 12:59:56 +01:00