maxibor
1772f4119c
adding igenomes to shh config
2019-04-18 11:19:53 +02:00
Tobias Schraink
4a915e330a
added warnings to run on SCRATCH
2019-04-17 17:15:16 -04:00
Tobias Schraink
51c2a54399
added nyu prince and bigpurple configs
2019-04-17 16:59:38 -04:00
James A. Fellows Yates
37ae0fa3a6
Merge pull request #38 from maxibor/master
...
add queueSize limited to 5 for SHH short queue
2019-03-20 13:52:59 +01:00
maxibor
76a5fcf077
switch to queueSize 16 for shh config
2019-03-20 13:44:13 +01:00
maxibor
0929349303
add queueSize limited to 5
2019-03-18 11:13:11 +01:00
Phil Ewels
009e8f52e3
Merge pull request #37 from KochTobi/patch-1
...
Update cfc config
2019-03-16 16:26:46 +01:00
KochTobi
aaa7be049a
Update cfc config
...
* Change singularity version documentation
2019-03-16 14:11:59 +01:00
Alexander Peltzer
d95b464e13
Merge pull request #35 from jfy133/master
...
Updates to SHH config
2019-03-15 09:56:44 +01:00
James A. Fellows Yates
ecb36dd8c2
Reduced memory and CPUs for cdag compatibility
...
Also matches 'fair use' policy
2019-03-14 21:26:43 +01:00
James A. Fellows Yates
e503a3a064
Added new cluster and singularity cache
2019-03-14 21:21:31 +01:00
James A. Fellows Yates
3da1373c14
Updated path to centralised singularity cache
2019-03-14 21:16:02 +01:00
James A. Fellows Yates
b4e8e271be
Merge pull request #3 from nf-core/master
...
Syncing
2019-03-14 21:13:48 +01:00
Phil Ewels
2e9a8642c0
Merge pull request #32 from phue/update-mendel-documentation
...
MENDEL: remove singularity support
2019-03-14 15:04:39 +01:00
Phil Ewels
79eb58bbb8
Merge pull request #34 from drpatelh/master
...
Add hostname for Crick
2019-03-13 18:04:26 +01:00
Harshil Patel
26c101a5ab
Alphabetical order
2019-03-13 16:53:30 +00:00
Harshil Patel
1843b2218c
Update nfcore_custom.config
2019-03-13 16:52:57 +00:00
Harshil Patel
857b0565c2
Update nfcore_custom.config
2019-03-13 16:51:45 +00:00
Harshil Patel
8bc975c8c3
Merge pull request #33 from ewels/master
...
Removed params.config_profile_name, added params.hostnames
2019-03-13 16:49:43 +00:00
Phil Ewels
d0ca05a221
;
2019-03-13 17:33:23 +01:00
Phil Ewels
1191863e1c
Removed params.config_profile_name, added params.hostnames
2019-03-13 17:19:34 +01:00
Phil Ewels
4ac14cd6aa
Merge pull request #30 from apeltzer/master
...
Last bump for binac/cfc
2019-03-13 09:15:04 +01:00
phue
13df59bfaf
remove singularity support
...
reasons:
* the kernel running on the compute nodes does not support overlayfs und thus containers downloaded from
public registries won't run because they lack the /lustre mountpoint
* building containers manually using the Singularity file would work, however nf-core pipelines will stop
providing these files in future releases
2019-03-12 17:57:31 +00:00
Alexander Peltzer
b19887af10
Merge remote-tracking branch 'upstream/master'
2019-03-12 18:49:01 +01:00
Alexander Peltzer
fbf9397182
Bump
2019-03-12 18:48:29 +01:00
Alexander Peltzer
ee249ca7af
Merge pull request #31 from ewels/master
...
Remove Travis requirement for PRs to be against dev branch
2019-03-12 18:42:55 +01:00
Phil Ewels
eaa1c8360f
Travis multiline yaml
2019-03-12 17:25:16 +01:00
Phil Ewels
a79564f0af
Remove requirement for dev branch PRs
2019-03-12 17:02:24 +01:00
Alexander Peltzer
3ee7195fa8
Central resource for both binac and cfc now
2019-03-12 14:58:41 +01:00
Phil Ewels
1e2c0c3e04
Merge pull request #29 from apeltzer/master
...
iGenomes Rollout on "Binac" too
2019-03-11 18:26:19 +01:00
Alexander Peltzer
68b759d6ef
Mini Update
2019-03-11 18:12:35 +01:00
Alexander Peltzer
f4f3c4e53b
Roll out binac too
2019-03-11 14:29:42 +01:00
Alexander Peltzer
880adfbb98
Merge pull request #28 from nf-core/ewels-patch-1
...
Remove incorrect comment in code example
2019-03-08 17:05:56 +01:00
Phil Ewels
ef1aeafef6
Remove incorrect comment in code example
2019-03-08 16:41:47 +01:00
Phil Ewels
ceecc15ac8
Merge pull request #27 from apeltzer/master
...
Add the TravisCI badge as we have tests now
2019-03-08 16:38:15 +01:00
Alexander Peltzer
c8c150d67c
Add the TravisCI badge as we have tests now
2019-03-08 13:39:25 +01:00
Phil Ewels
a2fa9d3f01
Merge pull request #24 from nf-core/dev
...
Include config integration test
2019-03-08 12:36:27 +01:00
Sven Fillinger
ba3d221af6
Corrects regex
2019-03-08 12:23:27 +01:00
Sven Fillinger
bbe0d30462
Fixes syntax error in travis script
2019-03-08 12:00:43 +01:00
Sven Fillinger
d4cd9b1f0a
Corrects profile grep
2019-03-08 11:58:37 +01:00
Sven Fillinger
e401769698
Corrects NXF command line call
2019-03-08 10:54:41 +01:00
Sven Fillinger
7962f7d756
Iterates over profiles and calls Nextflow
2019-03-08 10:52:09 +01:00
Sven Fillinger
1dc523d726
Removes test config
2019-03-08 10:37:27 +01:00
Sven Fillinger
4d43077ddf
Adds simple NXF config script
2019-03-08 10:36:03 +01:00
Alexander Peltzer
a4acbc3a10
Merge pull request #26 from apeltzer/master
...
Rolling out iGenomes now
2019-03-07 16:15:26 +01:00
Alexander Peltzer
6b21538062
Rolling out iGenomes now
2019-03-07 16:12:30 +01:00
Sven F
4e1cb46dc5
Update nfcore_custom.config
2019-03-06 20:22:45 +01:00
Sven F
da1b4572d3
Update .travis.yml
2019-03-06 20:11:20 +01:00
Sven F
23c05308de
Merge branch 'master' into dev
2019-03-06 19:54:32 +01:00
Sven F
af81005563
Uses dev branch for now
2019-03-06 19:51:03 +01:00