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custom-eager-crick

kevbrick-patch-1

master

olgabot-patch-2

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• 12c4adf62c
  Update crick.md custom-eager-crick alexandregilardet 2022-03-18 11:04:09 +0000
• 903f8b0cab
  Update conf/pipeline/eager/crick.config alexandregilardet 2022-03-18 11:02:02 +0000
• a56b88e264
  Update conf/pipeline/eager/crick.config alexandregilardet 2022-03-18 11:01:53 +0000
• d0bbc3e488
  Update conf/pipeline/eager/crick.config alexandregilardet 2022-03-18 11:01:46 +0000
• 4d566b842c
  Update conf/pipeline/eager/crick.config alexandregilardet 2022-03-18 11:01:10 +0000
• 97715512a4
  Update conf/pipeline/eager/crick.config alexandregilardet 2022-03-18 11:00:16 +0000
• a1a7ab2b7d
  Update conf/pipeline/eager/crick.config alexandregilardet 2022-03-18 11:00:03 +0000
• 30f710ada4
  Add debug profile Nathan S. Watson-Haigh 2022-03-17 13:38:43 +1030
• 2eb1d7f210
  Update crick.md alexandregilardet 2022-03-16 16:22:22 +0000
• a7e8927c61 added Crick config for eager in eager.config and crick.md Alexandre Gilardet 2022-03-16 16:11:21 +0000
• aa6821fa80
  Update crick.config alexandregilardet 2022-03-16 15:46:07 +0000
• af9b9916fb
  Update and rename custom_crick.config to crick.config alexandregilardet 2022-03-16 15:44:13 +0000
• 066a2181cb
  Merge pull request #353 from nf-core/praveenraj2018-patch-1 Praveen Raj S 2022-03-16 14:39:43 +0100
• 1d4f254e43
  Update munin.config Praveen Raj S 2022-03-16 14:37:28 +0100
• 9747d5fe15
  Added PileupSummariesForMutect2 in CPU limit list Praveen Raj S 2022-03-16 14:36:25 +0100
• 188c3a39cc add gis.md documentation ajodeh-juma 2022-03-16 16:17:54 +0300
• 06854c9f2d add gis.md documentation ajodeh-juma 2022-03-16 15:34:36 +0300
• d510cb254e
  Merge pull request #165 from ewels/fix-show-profiles Alexander Peltzer 2022-03-15 17:13:24 +0100
• 5828a48ef7
  Merge pull request #351 from nf-core/praveenraj2018-patch-1 Praveen Raj S 2022-03-15 17:00:09 +0100
• a844335942
  Update conf/munin.config Praveen Raj S 2022-03-15 16:59:06 +0100
• cb96c4bd2d
  Update conf/munin.config Praveen Raj S 2022-03-15 16:56:11 +0100
• 13c66f7e98
  Update conf/munin.config Praveen Raj S 2022-03-15 16:56:03 +0100
• 50c4610345
  Adjusted time and maxforks for Mutect2 Praveen Raj S 2022-03-15 16:29:19 +0100
• 1c339675c2
  Update and rename custom.config to custom_crick.config alexandregilardet 2022-03-15 14:32:32 +0000
• 44696c6040
  Custom config for nf-core eager on Crick's data and cluster alexandregilardet 2022-03-15 14:13:58 +0000
• 3e4fae71a4
  Merge branch 'master' into fix-show-profiles Alexander Peltzer 2022-03-15 14:52:29 +0100
• 47bb41a1d8
  Merge pull request #348 from jfy133/eva-update James A. Fellows Yates 2022-03-15 07:54:52 +0100
• 1b5037ce5e
  Update eva.config James A. Fellows Yates 2022-03-15 07:49:06 +0100
• 1565b2ce63
  Update eva.config James A. Fellows Yates 2022-03-15 07:42:23 +0100
• f725b6c431
  Apply suggestions from code review James A. Fellows Yates 2022-03-15 07:36:34 +0100
• a0f5ac7445
  Added references subdir to igenomes_base Nathan S. Watson-Haigh 2022-03-15 11:41:51 +1030
• 4670f8bf0c
  Update eva.config James A. Fellows Yates 2022-03-14 14:56:01 +0100
• a2e2e94333
  Merge pull request #344 from njspix/vai James A. Fellows Yates 2022-03-14 14:36:00 +0100
• a154738c5e
  Merge pull request #347 from nf-core/pr-template-update James A. Fellows Yates 2022-03-14 10:11:21 +0100
• b7909c33c8
  Update PULL_REQUEST_TEMPLATE.md James A. Fellows Yates 2022-03-14 08:27:10 +0100
• 30d9f82c65
  Merge pull request #138 from Emiller88/pr-templates James A. Fellows Yates 2022-03-14 08:06:09 +0100
• cc55026751 Add singularity to PATH Nathan Watson-Haigh 2022-03-13 07:39:31 +1030
• 2f0b022571 Fixed typos Nathan Watson-Haigh 2022-03-13 00:08:42 +1030
• dba3fb4c1d Added SAHMRI HPC profile docs Nathan Watson-Haigh 2022-03-13 00:05:34 +1030
• b58a9952be Added SAHMRI HPC profile Nathan Watson-Haigh 2022-03-12 21:24:05 +1030
• b638694bd0 Added SAHMRI HPC profile Nathan Watson-Haigh 2022-03-12 21:17:33 +1030
• 6c79c75eec
  Merge pull request #290 from maxozo/master Matiss 2022-03-11 09:21:09 +0000
• d067f61329
  remove extra spaces Nathan Spix 2022-03-07 15:22:18 -0500
• 17c77ad516 update singularity command Spix 2022-03-07 15:13:26 -0500
• c97c48ae5b update singularity command Spix 2022-03-07 15:11:45 -0500
• 429c7b4fa8 initial commit Spix 2022-03-07 15:01:46 -0500
• d0d86bfb2a
  Merge pull request #339 from jfy133/rnaseq_mpcdf Alexander Peltzer 2022-03-07 13:59:08 +0100
• 975fca6721
  Apply suggestions from code review James A. Fellows Yates 2022-03-07 13:51:00 +0100
• 5cde6f3886
  Merge pull request #342 from zajacn/master Alexander Peltzer 2022-03-07 13:44:00 +0100
• c2e0c9e6d4 Update on md file Natalia Zajac 2022-03-07 12:59:56 +0100
• 098296bce8
  Merge pull request #341 from zajacn/master Phil Ewels 2022-03-07 12:48:23 +0100
• 97058995ef Update on singularity cache Natalia Zajac 2022-03-07 12:37:01 +0100
• e07a0e548e Config Addition Natalia Zajac 2022-03-04 12:16:01 +0100
• 70318c3b2a Tweak eager settigs James Fellows Yates 2022-03-03 14:29:30 +0100
• 18890fc3cf
  Merge pull request #3 from ilight1542/mpcdf_eager_config_update James A. Fellows Yates 2022-03-03 14:25:58 +0100
• 546393ed18
  Apply suggestions from code review James A. Fellows Yates 2022-03-03 14:22:35 +0100
• 5a0543e4ac
  Merge branch 'rnaseq_mpcdf' into mpcdf_eager_config_update ilight1542 2022-03-03 14:17:18 +0100
• 25c644abb7 modified mpcdf configs (general + eager) ilight1542 2022-03-03 13:55:02 +0100
• 7112e74b73 Tweak settings based on latest batch specs James Fellows Yates 2022-03-03 13:43:40 +0100
• 008ade7ab3 Merge branch 'rnaseq_mpcdf' of github.com:jfy133/nf-core-configs into rnaseq_mpcdf James Fellows Yates 2022-03-03 12:26:18 +0100
• e649bfbb2e Linting James Fellows Yates 2022-03-03 12:26:14 +0100
• 17312604cf
  Update mpcdf.config James A. Fellows Yates 2022-03-03 12:25:06 +0100
• 94f8cbcb84 Add rnaseq pipeline specific config for MPCDF James Fellows Yates 2022-03-03 12:20:02 +0100
• 341ea3664e
  Merge pull request #336 from jfy133/master James A. Fellows Yates 2022-03-02 08:57:20 +0100
• 121452afad
  Linting James A. Fellows Yates 2022-03-02 08:51:20 +0100
• 15a0571eae
  Fix markdown James A. Fellows Yates 2022-03-02 08:50:42 +0100
• a412510ce8
  Merge pull request #335 from jfy133/master James A. Fellows Yates 2022-03-02 08:47:47 +0100
• adcfe22f98
  Remove draco entry to MPCDF profiles due to decomissioning James A. Fellows Yates 2022-03-02 08:38:55 +0100
• 8174fe6d52
  Merge pull request #2 from nf-core/jfy133-patch James A. Fellows Yates 2022-03-02 08:34:31 +0100
• 5547e45ab5
  Merge branch 'master' into jfy133-patch James A. Fellows Yates 2022-03-02 08:28:22 +0100
• ea052a7b67
  Merge pull request #334 from jfy133/eva-update James A. Fellows Yates 2022-03-01 09:23:04 +0100
• a6c12d8edc
  Merge pull request #322 from U-BDS/master James A. Fellows Yates 2022-03-01 08:29:54 +0100
• 00deea7442 Adding cheaha to Github Actions testing yaml. Austyn Trull 2022-02-28 10:00:13 -0600
• 06aaebbad1
  Merge pull request #303 from PCQuilis/patch-2 James A. Fellows Yates 2022-02-28 15:03:20 +0100
• 4fbebac9b3
  Merge pull request #304 from PCQuilis/patch-1 James A. Fellows Yates 2022-02-28 15:03:07 +0100
• d6f5209afc
  Update marvin.md James A. Fellows Yates 2022-02-28 15:01:12 +0100
• faf83eaeaa
  Merge pull request #305 from PCQuilis/master James A. Fellows Yates 2022-02-28 14:59:22 +0100
• 04d8a02ec9
  Update nfcore_custom.config James A. Fellows Yates 2022-02-28 14:56:37 +0100
• 5c686f996f
  Update main.yml James A. Fellows Yates 2022-02-28 14:52:32 +0100
• 1ff92db608
  Merge branch 'nf-core:master' into master PCQ 2022-02-28 14:50:41 +0100
• 89f6484325
  Merge pull request #319 from maltesemike/patch-2 James A. Fellows Yates 2022-02-28 14:06:06 +0100
• 46f046d477
  Update eva.config James A. Fellows Yates 2022-02-28 14:00:37 +0100
• d7d9951dbf
  Insert h_vmem for all nf-core pipelines James A. Fellows Yates 2022-02-28 14:00:16 +0100
• 6210ee874c
  Update eva.config James A. Fellows Yates 2022-02-28 13:57:37 +0100
• ff5750936d
  Merge pull request #332 from projectoriented/hasta/markdupe_remove_cpus Mei Wu 2022-02-23 16:40:57 +0100
• dcba537d15 picard md is single threaded Mei Wu 2022-02-21 16:19:17 +0100
• 91b5875b44
  Merge pull request #331 from nf-core/praveenraj2018-patch-1 Maxime U. Garcia 2022-02-14 13:12:11 +0100
• 41e00ae8f9
  Update conf/munin.config Maxime U. Garcia 2022-02-14 13:11:46 +0100
• 90936a5518
  Added: runOptions to singularity Praveen Raj S 2022-02-14 12:45:20 +0100
• 2d434c6ee5
  Merge pull request #321 from nf-core/combiz-patch-1 Combiz Khozoie 2022-02-11 14:49:30 +0000
• 4a936a685e
  Merge pull request #317 from nf-core/praveenraj2018-patch-1 Maxime U. Garcia 2022-02-11 15:33:18 +0100
• a77f718ae2
  Merge pull request #330 from nf-core/master Combiz Khozoie 2022-02-11 14:18:01 +0000
• 0d18767d0c
  Merge pull request #329 from mashehu/master Matthias Hörtenhuber 2022-02-11 14:32:38 +0100
• b98ab26662 fix markdownlint errors Matthias Hörtenhuber 2022-02-11 14:09:16 +0100
• fcc856c8da update node version for markdownlint Matthias Hörtenhuber 2022-02-11 11:03:18 +0000
• 3ce32f50c4
  Update imperial.config Combiz Khozoie 2022-02-11 11:02:40 +0000
• 683564de1b
  Update main.yml Combiz Khozoie 2022-02-11 09:35:18 +0000
• 8937699abe
  Update README.md Combiz Khozoie 2022-02-11 09:33:54 +0000
• f33bc965d6
  Update nfcore_custom.config Combiz Khozoie 2022-02-11 09:32:50 +0000
• b99b74b2d3
  Update imperial.config Combiz Khozoie 2022-02-11 00:26:45 +0000