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nf-configs/docs/jax.md

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nf-core/configs: JAX Configuration

All nf-core pipelines have been successfully configured for use on the JAX Sumner cluster at The Jackson Laboratory.

To use, run the pipeline with -profile jax. This will download and launch the jax.config which has been pre-configured with a setup suitable for JAX Sumner cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline and slurm will be used as well.

NB: You will need an account to use the HPC cluster JAX in order to run the pipeline. If in doubt contact IT. NB: Nextflow should not be executed on the login nodes. If in doubt contact IT.