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747 B
nf-core/configs: HASTA rnafusion specific configuration
Extra specific configuration for rnafusion pipeline
Usage
To use, run the pipeline with -profile hasta
.
This will download and launch the rnafusion specific hasta.config
which has been pre-configured with a setup suitable for the HASTA
cluster.
Example: nextflow run nf-core/rnafusion -profile hasta
rnafusion specific configurations for HASTA
Specific configurations for HASTA
has been made for rnafusion.
- Always run all the analysis steps (all = true)
- Use trimming (trim = true)
- Take the fusions identified by at least 2 fusion detection tools to the fusioninspector analysis (fusioninspector_filter = true)