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nf-configs/docs/pipeline/rnafusion/hasta.md
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# nf-core/configs: HASTA rnafusion specific configuration
Extra specific configuration for rnafusion pipeline
## Usage
To use, run the pipeline with `-profile hasta`.
This will download and launch the rnafusion specific [`hasta.config`](../../../conf/pipeline/rnafusion/munin.config) which has been pre-configured with a setup suitable for the `HASTA` cluster.
Example: `nextflow run nf-core/rnafusion -profile hasta`
## rnafusion specific configurations for HASTA
Specific configurations for `HASTA` has been made for rnafusion.
- Always run all the analysis steps (all = true)
- Use trimming (trim = true)
- Take the fusions identified by at least 2 fusion detection tools to the fusioninspector analysis (fusioninspector_filter = true)