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nf-configs/docs/kraken.md
Martin Proks c583aa0233 Added kraken config (#15) 
* Added kraken template
* docs: updated some info
* fix: updated igenomes_base path
2019-08-05 11:19:05 +02:00

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nf-core/configs: KRAKEN Configuration

This profile can be only combined with jenkins.config. It is used for testing pipeline with real data on in-house cluster located at SciLifeLab.

To use, run the pipeline with -profile kraken. This will download and launch the kraken.config which has been pre-configured to test the pipeline using docker by default.

Example: nextflow run -profile kraken,jenkins