nf-core_modules/.github/workflows/fastqc.yml

name: fastqc
on:
  push:
    paths:
      - software/fastqc/**
      - .github/workflows/fastqc.yml
      - tests
  pull_request:
    paths:
      - software/fastqc/**
      - .github/workflows/fastqc.yml
      - tests

jobs:
  ci_test:
    runs-on: ubuntu-latest
    env:
      NXF_ANSI_LOG: false
    steps:

    - uses: actions/checkout@v2

    - name: Install Nextflow
      run: |
        export NXF_VER="20.07.1"
        wget -qO- get.nextflow.io | bash
        sudo mv nextflow /usr/local/bin/

    - name: Set up Python
      uses: actions/setup-python@v2
      with:
        python-version: "3.x"
    - name: Install dependencies
      run: python -m pip install --upgrade pip pytest-workflow

    # Test the module
    - run: pytest --tag fastqc --symlink --wt 2