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nf-core_modules/tests/software/bowtie/test.yml

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Rename bowtie_index to bowtie_build
2021-02-01 17:53:31 +00:00
- name: Run bowtie build
command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_build -c tests/config/nextflow.config
added module yml files
2020-12-08 12:40:32 +00:00
tags:
added tests for bowtie module
2020-12-08 12:59:14 +00:00
- bowtie
Rename bowtie_index to bowtie_build
2021-02-01 17:53:31 +00:00
- bowtie_build
added module yml files
2020-12-08 12:40:32 +00:00
files:
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.1.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.2.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: bfd10c5319c6a0dbc540fd789254a5dd
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.3.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: cd201e81724f3099131aec16ef2cc53b
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.4.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: bbb9d6d21ad765d135f95290204e8433
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.rev.1.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: 44f719c2fe42e1f35d54e798775846d1
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.rev.2.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: f3c398bba5158f4039334a932d79c051
added module yml files
2020-12-08 12:40:32 +00:00
Rename bowtie_index to bowtie_build
2021-02-01 17:53:31 +00:00
- name: Run bowtie build and align single-end
added tests for bowtie module
2020-12-08 12:59:14 +00:00
command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_alignment_single_end -c tests/config/nextflow.config
added module yml files
2020-12-08 12:40:32 +00:00
tags:
added tests for bowtie module
2020-12-08 12:59:14 +00:00
- bowtie
added bowtie_align workflow test
2020-12-08 13:19:34 +00:00
- bowtie_align
added module yml files
2020-12-08 12:40:32 +00:00
files:
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.1.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.2.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: bfd10c5319c6a0dbc540fd789254a5dd
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.3.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: cd201e81724f3099131aec16ef2cc53b
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.4.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: bbb9d6d21ad765d135f95290204e8433
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.rev.1.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: 44f719c2fe42e1f35d54e798775846d1
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.rev.2.ebwt
added tests for bowtie module
2020-12-08 12:59:14 +00:00
md5sum: f3c398bba5158f4039334a932d79c051
- path: output/bowtie/test.out
bowtie bam output
2020-12-16 10:02:58 +00:00
md5sum: a81cb18024616415a6cec3108a36fccd
- path: output/bowtie/test.bam
update test.bam md5sums
2020-12-18 10:16:58 +00:00
md5sum: 9feed8a55d4b5e600dcc577768ef07fc
added module yml files
2020-12-08 12:40:32 +00:00
fixed linting errors
2020-12-18 08:50:05 +00:00
- name: Run bowtie index and align paired-end
added test yml and md5s
2020-12-09 15:54:11 +00:00
command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_alignment_paired_end -c tests/config/nextflow.config
tags:
- bowtie
- bowtie_align
files:
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.1.ebwt
added test yml and md5s
2020-12-09 15:54:11 +00:00
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.2.ebwt
added test yml and md5s
2020-12-09 15:54:11 +00:00
md5sum: bfd10c5319c6a0dbc540fd789254a5dd
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.3.ebwt
added test yml and md5s
2020-12-09 15:54:11 +00:00
md5sum: cd201e81724f3099131aec16ef2cc53b
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.4.ebwt
added test yml and md5s
2020-12-09 15:54:11 +00:00
md5sum: bbb9d6d21ad765d135f95290204e8433
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.rev.1.ebwt
added test yml and md5s
2020-12-09 15:54:11 +00:00
md5sum: 44f719c2fe42e1f35d54e798775846d1
removed index from test output
2020-12-18 10:06:02 +00:00
- path: output/bowtie/bowtie/NC_010473.rev.2.ebwt
added test yml and md5s
2020-12-09 15:54:11 +00:00
md5sum: f3c398bba5158f4039334a932d79c051
- path: output/bowtie/test.out
bowtie bam output
2020-12-16 10:02:58 +00:00
md5sum: a23e9a2a76e949aeb3693bcfae41a615
- path: output/bowtie/test.bam
update test.bam md5sums
2020-12-18 10:16:58 +00:00
md5sum: cf6a6381aa504e8342638ff3b509721e
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