nf-core_modules/tests/modules/pydamage/analyze/test.yml

- name: pydamage analyze test workflow
  command: nextflow run tests/modules/pydamage/analyze -entry test_pydamage -c tests/config/nextflow.config
  tags:
    - pydamage
    - pydamage/analyze
  files:
    - path: output/pydamage/pydamage_results/pydamage_results.csv
      md5sum: 37ee6b4dee6890fd2ec8550337f21ac9
Module new version reporting fixes (#753) * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Fix IQ tree * Fix picard markdup and merge sam * Fix plink/vcf version * Fix plink version output * Fix prokka version command * Fix pydamage * Try fixing markduplicates * Fix snpEff * Fix vcftools version * Fix pydamage and filtersamreads test run * Fix MarkDuplicates tests * Add missing unsorted checks * Remove MD5 sym due to stochasicity in BAM file 2021-09-28 09:51:19 +00:00			`- name: pydamage analyze test workflow`
Add pydamage analyze module (#705) * add pydamage module * remove TODOs * split module by subcommands * update version parsing * remove forgotten TODOs * update module names * remove old holistic module * Update modules/pydamage/analyze/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * add keywords * simplify PR to analyze subcommand Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> 2021-09-16 12:03:51 +00:00			`command: nextflow run tests/modules/pydamage/analyze -entry test_pydamage -c tests/config/nextflow.config`
			`tags:`
			`- pydamage`
			`- pydamage/analyze`
			`files:`
			`- path: output/pydamage/pydamage_results/pydamage_results.csv`
Pydamage analyzer update (#863) * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Update md5sum due to test-dataset update Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> 2021-10-18 13:24:49 +00:00			`md5sum: 37ee6b4dee6890fd2ec8550337f21ac9`