millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-10 20:23:10 +00:00
Code Issues Releases Packages Activity
nf-core_modules/tests/modules/multiqc/test.yml

42 lines
1.8 KiB
YAML
Raw Normal View History

possible fix for name collisions
2022-06-07 11:58:27 +00:00
- name: multiqc test_multiqc
command: nextflow run ./tests/modules/multiqc -entry test_multiqc -c ./tests/config/nextflow.config -c ./tests/modules/multiqc/nextflow.config
tags:
- multiqc
files:
Modify MULTIQC: separate logo from config file (#2027) * Separate MultiQC config from logo input channel * Update meta.yml * Update main.nf * Add test for new check * md5sum -> contains
2022-09-08 07:12:53 +00:00
- path: output/multiqc/multiqc_data/multiqc.log
contains: ["MultiQC complete"]
- path: output/multiqc/multiqc_data/multiqc_citations.txt
contains: ["10.1093/bioinformatics/btw354"]
- path: output/multiqc/multiqc_data/multiqc_data.json
contains: ["report_data_sources"]
possible fix for name collisions
2022-06-07 11:58:27 +00:00
- path: output/multiqc/multiqc_report.html
Modify MULTIQC: separate logo from config file (#2027) * Separate MultiQC config from logo input channel * Update meta.yml * Update main.nf * Add test for new check * md5sum -> contains
2022-09-08 07:12:53 +00:00
contains: ["Abandon hope all ye who enter here.."]
possible fix for name collisions
2022-06-07 11:58:27 +00:00
- name: multiqc test_multiqc_fn_collision
command: nextflow run ./tests/modules/multiqc -entry test_multiqc_fn_collision -c ./tests/config/nextflow.config -c ./tests/modules/multiqc/nextflow.config
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
tags:
- multiqc
files:
Modify MULTIQC: separate logo from config file (#2027) * Separate MultiQC config from logo input channel * Update meta.yml * Update main.nf * Add test for new check * md5sum -> contains
2022-09-08 07:12:53 +00:00
- path: output/multiqc/multiqc_data/multiqc.log
contains: ["MultiQC complete"]
- path: output/multiqc/multiqc_data/multiqc_citations.txt
contains: ["10.1093/bioinformatics/btw354"]
- path: output/multiqc/multiqc_data/multiqc_data.json
contains: ["report_data_sources"]
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
- path: output/multiqc/multiqc_report.html
Modify MULTIQC: separate logo from config file (#2027) * Separate MultiQC config from logo input channel * Update meta.yml * Update main.nf * Add test for new check * md5sum -> contains
2022-09-08 07:12:53 +00:00
contains: ["Abandon hope all ye who enter here.."]
- name: multiqc test_multiqc_config
command: nextflow run ./tests/modules/multiqc -entry test_multiqc_config -c ./tests/config/nextflow.config -c ./tests/modules/multiqc/nextflow.config
tags:
- multiqc
files:
- path: output/multiqc/multiqc_data/multiqc.log
contains: ["MultiQC complete"]
- path: output/multiqc/multiqc_data/multiqc_citations.txt
contains: ["10.1093/bioinformatics/btw354"]
- path: output/multiqc/multiqc_data/multiqc_data.json
contains: ["report_data_sources"]
- path: output/multiqc/multiqc_report.html
contains: ["Abandon hope all ye who enter here.."]
Reference in a new issue Copy permalink