nf-core_modules/modules/pangolin/meta.yml

name: pangolin
description: Phylogenetic Assignment of Named Global Outbreak LINeages
keywords:
    - covid
    - pangolin
    - lineage
tools:
    - star:
        description: |
            Phylogenetic Assignment of Named Global Outbreak LINeages
        homepage: https://github.com/cov-lineages/pangolin#pangolearn-description
        manual: https://github.com/cov-lineages/pangolin#pangolearn-description
        licence: ['GPL-3.0-or-later']
input:
    - meta:
        type: map
        description: |
            Groovy Map containing sample information
    - fasta:
        type: file
        description: |
            The genome assembly to be evaluated
output:
    - report:
        type: file
        description: Pangolin lineage report
        pattern: "*.{csv}"
    - versions:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
authors:
    - "@kevinmenden"
    - "@drpatelh"
added pangolin module 2021-01-29 10:03:54 +00:00			`name: pangolin`
			`description: Phylogenetic Assignment of Named Global Outbreak LINeages`
			`keywords:`
Tidy up 2021-02-09 23:26:45 +00:00			`- covid`
			`- pangolin`
			`- lineage`
added pangolin module 2021-01-29 10:03:54 +00:00			`tools:`
Tidy up 2021-02-09 23:26:45 +00:00			`- star:`
			`description: \|`
			`Phylogenetic Assignment of Named Global Outbreak LINeages`
			`homepage: https://github.com/cov-lineages/pangolin#pangolearn-description`
			`manual: https://github.com/cov-lineages/pangolin#pangolearn-description`
Backfill software licenses meta (#876) * backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org> 2021-10-22 22:39:54 +00:00			`licence: ['GPL-3.0-or-later']`
added pangolin module 2021-01-29 10:03:54 +00:00			`input:`
Tidy up 2021-02-09 23:26:45 +00:00			`- meta:`
			`type: map`
			`description: \|`
			`Groovy Map containing sample information`
			`- fasta:`
			`type: file`
			`description: \|`
			`The genome assembly to be evaluated`
added pangolin module 2021-01-29 10:03:54 +00:00			`output:`
Tidy up 2021-02-09 23:26:45 +00:00			`- report:`
			`type: file`
			`description: Pangolin lineage report`
			`pattern: "*.{csv}"`
Update versions key in meta.yml for all modules (#787) 2021-10-03 07:20:26 +00:00			`- versions:`
Tidy up 2021-02-09 23:26:45 +00:00			`type: file`
Update versions key in meta.yml for all modules (#787) 2021-10-03 07:20:26 +00:00			`description: File containing software versions`
Bulk update modules to use versions.yml (#739) * New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-09-27 08:41:24 +00:00			`pattern: "versions.yml"`
added pangolin module 2021-01-29 10:03:54 +00:00			`authors:`
Tidy up 2021-02-09 23:26:45 +00:00			`- "@kevinmenden"`
			`- "@drpatelh"`