2019-12-05 14:53:38 +00:00
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name: FastQC
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2019-12-05 14:44:10 +00:00
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on:
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2019-12-05 15:09:28 +00:00
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push: {}
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2019-12-05 14:44:10 +00:00
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pull_request:
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2020-07-11 12:36:12 +00:00
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paths: software/fastqc/*
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2019-12-05 14:44:10 +00:00
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jobs:
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2019-12-05 15:03:00 +00:00
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run_ci_test:
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2019-12-05 14:44:10 +00:00
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runs-on: ubuntu-latest
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2020-07-11 15:14:14 +00:00
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env:
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NXF_ANSI_LOG: false
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2019-12-05 14:44:10 +00:00
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steps:
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# Check out the repository
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- uses: actions/checkout@v1
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2019-12-06 08:24:33 +00:00
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submodules: true
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2019-12-05 14:44:10 +00:00
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2019-12-05 15:03:00 +00:00
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- name: Install Nextflow
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run: |
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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2019-12-05 14:44:10 +00:00
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# Test the module
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2020-07-11 15:14:14 +00:00
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- run: nextflow run ./software/fastqc/test/
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