2019-12-05 15:53:38 +01:00
|
|
|
name: FastQC
|
2019-12-05 15:44:10 +01:00
|
|
|
on:
|
2019-12-05 16:09:28 +01:00
|
|
|
push: {}
|
2019-12-05 15:44:10 +01:00
|
|
|
pull_request:
|
2020-07-11 14:36:12 +02:00
|
|
|
paths: software/fastqc/*
|
2019-12-05 15:44:10 +01:00
|
|
|
|
|
|
|
|
jobs:
|
2019-12-05 16:03:00 +01:00
|
|
|
run_ci_test:
|
2019-12-05 15:44:10 +01:00
|
|
|
runs-on: ubuntu-latest
|
2020-07-11 17:14:14 +02:00
|
|
|
env:
|
|
|
|
|
NXF_ANSI_LOG: false
|
2019-12-05 15:44:10 +01:00
|
|
|
steps:
|
|
|
|
|
|
|
|
|
|
# Check out the repository
|
|
|
|
|
- uses: actions/checkout@v1
|
2019-12-06 09:24:33 +01:00
|
|
|
submodules: true
|
2019-12-05 15:44:10 +01:00
|
|
|
|
2019-12-05 16:03:00 +01:00
|
|
|
- name: Install Nextflow
|
|
|
|
|
run: |
|
|
|
|
|
wget -qO- get.nextflow.io | bash
|
|
|
|
|
sudo mv nextflow /usr/local/bin/
|
|
|
|
|
|
2019-12-05 15:44:10 +01:00
|
|
|
# Test the module
|
2020-07-11 17:14:14 +02:00
|
|
|
- run: nextflow run ./software/fastqc/test/
|
