nf-core_modules/tests/modules/samtools/flagstat/test.yml

- name: samtools flagstat
  command: nextflow run ./tests/modules/samtools/flagstat -entry test_samtools_flagstat -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/flagstat
  files:
    - path: ./output/samtools/test.paired_end.sorted.bam.flagstat
      md5sum: 4f7ffd1e6a5e85524d443209ac97d783
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`- name: samtools flagstat`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run ./tests/modules/samtools/flagstat -entry test_samtools_flagstat -c tests/config/nextflow.config`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`tags:`
			`- samtools`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- samtools/flagstat`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`files:`
Update samtools from 1.10 to 1.12 (#530) * feat: remove social preview image to use GitHub OpenGraph * feat: update samtools from 1.10 to 1.12 * fix: CI tests * fix: add meta.yml file for samtools/merge * Update software/samtools/merge/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update software/samtools/merge/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> 2021-06-07 11:07:32 +00:00			`- path: ./output/samtools/test.paired_end.sorted.bam.flagstat`
nf-core modules bump-versions for all modules (#630) * Add blacklist of modules that shouldn't be updated to .nf-core.yml * nf-core modules bump-versions for all modules * Remove TODO statements identified by linting * Fix md5sums for failing tests * Fix more tests 2021-07-28 08:10:44 +00:00			`md5sum: 4f7ffd1e6a5e85524d443209ac97d783`