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ci: Remove pytest_subworkflows

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Edmund Miller 2021-10-27 11:39:32 -05:00
parent 527ccdb419
commit 04cf48b663
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2 changed files with 20 additions and 21 deletions
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20
tests/config/pytest_modules.yml
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@ -1374,3 +1374,23 @@ yara/index:
yara/mapper: yara/mapper:
- modules/yara/mapper/** - modules/yara/mapper/**
- tests/modules/yara/mapper/** - tests/modules/yara/mapper/**
subworkflows/align_bowtie2:
- subworkflows/nf-core/align_bowtie2/**
- tests/subworkflows/nf-core/align_bowtie2/**
subworkflows/bam_stats_samtools: &subworkflows/bam_stats_samtools
- subworkflows/nf-core/bam_stats_samtools/**
- tests/subworkflows/nf-core/bam_stats_samtools/**
subworkflows/bam_sort_samtools:
- subworkflows/nf-core/bam_sort_samtools/**
- tests/subworkflows/nf-core/bam_sort_samtools/**
subworkflows/sra_fastq:
- subworkflows/nf-core/sra_fastq/**
- tests/subworkflows/nf-core/sra_fastq/**
subworkflows/gatk_create_som_pon:
- subworkflows/nf-core/gatk_create_som_pon/**
- tests/subworkflows/nf-core/gatk_create_som_pon/**

21
tests/config/pytest_subworkflows.yml
View file

@ -1,21 +0,0 @@
subworkflows/align_bowtie2:
- subworkflows/nf-core/align_bowtie2/**
- tests/subworkflows/nf-core/align_bowtie2/**
subworkflows/bam_stats_samtools:
- subworkflows/nf-core/bam_stats_samtools/**
- tests/subworkflows/nf-core/bam_stats_samtools/**
subworkflows/bam_sort_samtools:
- subworkflows/nf-core/bam_sort_samtools/**
- tests/subworkflows/nf-core/bam_sort_samtools/**
subworkflows/sra_fastq:
- subworkflows/nf-core/sra_fastq/**
- tests/subworkflows/nf-core/sra_fastq/**
subworkflows/gatk_create_som_pon:
- subworkflows/nf-core/gatk_create_som_pon/**
- tests/subworkflows/nf-core/gatk_create_som_pon/**