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Fixed with mr file for size issues

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This commit is contained in:
sruthipsuresh 2021-01-14 02:12:57 -06:00
parent 00ef1d3863
commit 09d56efe12
2 changed files with 4 additions and 4 deletions
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4
tests/software/preseq/main.nf
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@ -13,7 +13,7 @@ workflow test_preseq_single_end {
def input = [] def input = []
input = [ [ id:'test', single_end:true ], // meta map input = [ [ id:'test', single_end:true ], // meta map
[ file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true) ]] [ file('https://github.com/smithlabcode/preseq/raw/master/data/SRR1003759_5M_subset.mr', checkIfExists: true), ] ]
PRESEQ_LCEXTRAP_SE ( input ) PRESEQ_LCEXTRAP_SE ( input )
} }
@ -25,7 +25,7 @@ workflow test_preseq_paired_end {
def input = [] def input = []
input = [ [ id:'test', single_end:false ], // meta map input = [ [ id:'test', single_end:false ], // meta map
[ file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true) ]] [ file('https://github.com/smithlabcode/preseq/raw/master/data/SRR1003759_5M_subset.mr', checkIfExists: true), ] ]
PRESEQ_LCEXTRAP_PE ( input ) PRESEQ_LCEXTRAP_PE ( input )
} }

4
tests/software/preseq/test.yml
View file

@ -6,7 +6,7 @@
files: files:
- path: output/test_preseq_single_end/test.ccurve.txt - path: output/test_preseq_single_end/test.ccurve.txt
md5sum: 5253ffcfd4b6162851631efdbfe16f92 md5sum: 76ae04c8eaf19c94e3210bb69da38498
- path: output/test_preseq_single_end/test.command.log - path: output/test_preseq_single_end/test.command.log
- name: Run preseq paired-end lcextrap - name: Run preseq paired-end lcextrap
@ -17,5 +17,5 @@
files: files:
- path: output/test_preseq_paired_end/test.ccurve.txt - path: output/test_preseq_paired_end/test.ccurve.txt
md5sum: 66b339780630fc1aa72dcfbd0a4490fd md5sum: 2836d2fabd2213f097fd7063db550276
- path: output/test_preseq_paired_end/test.command.log - path: output/test_preseq_paired_end/test.command.log