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Add missing docs
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1 changed files with 9 additions and 1 deletions
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@ -39,8 +39,12 @@ input:
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e.g. [ id:'test', single_end:false ]
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e.g. [ id:'test', single_end:false ]
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- bam:
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- bam:
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type: file
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type: file
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description: A sorted (with samtools sort) bam file
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description: Co-ordinate sorted BAM file
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pattern: "*.bam"
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pattern: "*.bam"
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- bai:
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type: file
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description: Index file for co-ordinate sorted BAM file
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pattern: "*.bai"
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- bed:
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- bed:
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type: file
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type: file
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description: BED file with primer labels and positions
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description: BED file with primer labels and positions
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@ -55,6 +59,10 @@ output:
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type: file
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type: file
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description: iVar generated trimmed bam file (unsorted)
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description: iVar generated trimmed bam file (unsorted)
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pattern: "*.bam"
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pattern: "*.bam"
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- log:
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type: file
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description: Log file generated by iVar for use with MultiQC
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pattern: "*.log"
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- version:
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- version:
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type: file
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type: file
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description: File containing software version
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description: File containing software version
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