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Merge pull request #44 from drpatelh/master

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Change test directory name to input for FastQC
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Felix Krueger 2020-07-15 15:17:52 +02:00 committed by GitHub
commit 45cc9ede3e
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4 changed files with 2 additions and 2 deletions
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0
software/fastqc/test/data/test_R1.fastq.gz → software/fastqc/test/input/test_R1.fastq.gz
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software/fastqc/test/data/test_R2.fastq.gz → software/fastqc/test/input/test_R2.fastq.gz
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software/fastqc/test/data/test_single_end.fastq.gz → software/fastqc/test/input/test_single_end.fastq.gz
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4
software/fastqc/test/main.nf
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@ -11,7 +11,7 @@ include { FASTQC } from '../main.nf'
* Test if FASTQC runs with single-end data * Test if FASTQC runs with single-end data
*/ */
workflow test_single_end { workflow test_single_end {
input_files = Channel.fromPath("data/test_single_end.fastq.gz") input_files = Channel.fromPath("input/test_single_end.fastq.gz")
.map {f -> [f.baseName, true, f]} .map {f -> [f.baseName, true, f]}
FASTQC(input_files) FASTQC(input_files)
} }
@ -20,7 +20,7 @@ workflow test_single_end {
* Test if FASTQC runs with paired end data * Test if FASTQC runs with paired end data
*/ */
workflow test_paired_end { workflow test_paired_end {
input_files = Channel.fromFilePairs("data/test_R{1,2}.fastq.gz") input_files = Channel.fromFilePairs("input/test_R{1,2}.fastq.gz")
.map {f -> [f[0], false, f[1]]} .map {f -> [f[0], false, f[1]]}
FASTQC(input_files) FASTQC(input_files)
} }