millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 02:58:17 +00:00
Code Issues Releases Packages Activity

ci: Update sra_fastq tags and pytest_modules

Browse source
This commit is contained in:
Edmund Miller 2021-10-27 17:34:24 -05:00
parent 17cbcdac86
commit 74e134f19d
No known key found for this signature in database
GPG key ID: BD387FF7BC10AA9D
2 changed files with 6 additions and 6 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
tests/config/pytest_modules.yml
View file

@ -1251,11 +1251,11 @@ spatyper:
- modules/spatyper/**
- tests/modules/spatyper/**
sratools/fasterqdump:
sratools/fasterqdump: &sratools/fasterqdump
- modules/sratools/fasterqdump/**
- tests/modules/sratools/fasterqdump/**
sratools/prefetch:
sratools/prefetch: &sratools/prefetch
- modules/sratools/prefetch/**
- tests/modules/sratools/prefetch/**
@ -1394,6 +1394,8 @@ subworkflows/align_bowtie2:
subworkflows/sra_fastq:
- subworkflows/nf-core/sra_fastq/**
- tests/subworkflows/nf-core/sra_fastq/**
- *sratools/fasterqdump
- *sratools/prefetch
subworkflows/gatk_create_som_pon:
- subworkflows/nf-core/gatk_create_som_pon/**

6
tests/modules/sratools/fasterqdump/test.yml
View file

@ -1,8 +1,7 @@
- name: sratools fasterqdump test_sratools_fasterqdump_single_end
command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_single_end -c tests/config/nextflow.config
tags:
- sratools
- sratools/fasterqdump
- subworkflows/sra_fastq
files:
- path: output/sratools/SRR13255544.fastq.gz
md5sum: 1054c7b71884acdb5eed8a378f18be82
@ -12,8 +11,7 @@
- name: sratools fasterqdump test_sratools_fasterqdump_paired_end
command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_paired_end -c tests/config/nextflow.config
tags:
- sratools
- sratools/fasterqdump
- subworkflows/sra_fastq
files:
- path: output/sratools/SRR11140744_1.fastq.gz
md5sum: 193809c784a4ea132ab2a253fa4f55b6