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ci: Update sra_fastq tags and pytest_modules

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Edmund Miller 2021-10-27 17:34:24 -05:00
parent 17cbcdac86
commit 74e134f19d
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GPG key ID: BD387FF7BC10AA9D
2 changed files with 6 additions and 6 deletions
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6
tests/config/pytest_modules.yml
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@ -1251,11 +1251,11 @@ spatyper:
- modules/spatyper/** - modules/spatyper/**
- tests/modules/spatyper/** - tests/modules/spatyper/**
sratools/fasterqdump: sratools/fasterqdump: &sratools/fasterqdump
- modules/sratools/fasterqdump/** - modules/sratools/fasterqdump/**
- tests/modules/sratools/fasterqdump/** - tests/modules/sratools/fasterqdump/**
sratools/prefetch: sratools/prefetch: &sratools/prefetch
- modules/sratools/prefetch/** - modules/sratools/prefetch/**
- tests/modules/sratools/prefetch/** - tests/modules/sratools/prefetch/**
@ -1394,6 +1394,8 @@ subworkflows/align_bowtie2:
subworkflows/sra_fastq: subworkflows/sra_fastq:
- subworkflows/nf-core/sra_fastq/** - subworkflows/nf-core/sra_fastq/**
- tests/subworkflows/nf-core/sra_fastq/** - tests/subworkflows/nf-core/sra_fastq/**
- *sratools/fasterqdump
- *sratools/prefetch
subworkflows/gatk_create_som_pon: subworkflows/gatk_create_som_pon:
- subworkflows/nf-core/gatk_create_som_pon/** - subworkflows/nf-core/gatk_create_som_pon/**

6
tests/modules/sratools/fasterqdump/test.yml
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@ -1,8 +1,7 @@
- name: sratools fasterqdump test_sratools_fasterqdump_single_end - name: sratools fasterqdump test_sratools_fasterqdump_single_end
command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_single_end -c tests/config/nextflow.config command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_single_end -c tests/config/nextflow.config
tags: tags:
- sratools - subworkflows/sra_fastq
- sratools/fasterqdump
files: files:
- path: output/sratools/SRR13255544.fastq.gz - path: output/sratools/SRR13255544.fastq.gz
md5sum: 1054c7b71884acdb5eed8a378f18be82 md5sum: 1054c7b71884acdb5eed8a378f18be82
@ -12,8 +11,7 @@
- name: sratools fasterqdump test_sratools_fasterqdump_paired_end - name: sratools fasterqdump test_sratools_fasterqdump_paired_end
command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_paired_end -c tests/config/nextflow.config command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_paired_end -c tests/config/nextflow.config
tags: tags:
- sratools - subworkflows/sra_fastq
- sratools/fasterqdump
files: files:
- path: output/sratools/SRR11140744_1.fastq.gz - path: output/sratools/SRR11140744_1.fastq.gz
md5sum: 193809c784a4ea132ab2a253fa4f55b6 md5sum: 193809c784a4ea132ab2a253fa4f55b6