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bcftools_filter adding argument to test to enable md5 check

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This commit is contained in:
JoseEspinosa 2021-02-02 10:19:34 +01:00
parent c25f8f0f6c
commit 8e4764b8ed
2 changed files with 3 additions and 2 deletions
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3
tests/software/bcftools/main.nf
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@ -2,7 +2,8 @@
nextflow.enable.dsl = 2
include { BCFTOOLS_FILTER } from '../../../software/bcftools/filter/main.nf' addParams( options: [:] )
//keep arg of bcftools_filter, otherwise md5 will change on each execution
include { BCFTOOLS_FILTER } from '../../../software/bcftools/filter/main.nf' addParams( options: ['args': '--no-version'] )
include { BCFTOOLS_STATS } from '../../../software/bcftools/stats/main.nf' addParams( options: [:] )
include { BCFTOOLS_BGZIP } from '../../../software/bcftools/bgzip/main.nf' addParams( options: [:] )
include { BCFTOOLS_TABIX } from '../../../software/bcftools/tabix/main.nf' addParams( options: [:] )

2
tests/software/bcftools/test.yml
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@ -5,7 +5,7 @@
- bcftools_filter
files:
- path: output/bcftools/test.vcf.gz
md5sum: b994e60162fd97c118ddd45b08018d98
md5sum: 16947ce72a127938d881113a1e6e696b
- name: Run bcftools stats test workflow
command: nextflow run ./tests/software/bcftools/ -profile docker -entry test_bcftools_stats -c tests/config/nextflow.config