Fixed md5sum, fixed filters, fixed slop input

.github/filters.yml

@@ -147,24 +147,24 @@ ucsc_bedgraphtobigwig:
 
 bedtools_complement:
   - software/bedtools/complement/**
-  - tests/software/bedtools/complement**
+  - tests/software/bedtools/complement/**
 
 bedtools_genomecov:
   - software/bedtools/genomecov/**
-  - tests/software/bedtools/**
+  - tests/software/bedtools/genomecov/**
 
 bedtools_intersect:
   - software/bedtools/intersect/**
-  - tests/software/bedtools/**
+  - tests/software/bedtools/intersect/**
 
 bedtools_merge:
   - software/bedtools/merge/**
-  - tests/software/bedtools/**
+  - tests/software/bedtools/merge/**
 
 bedtools_slop:
   - software/bedtools/slop/**
-  - tests/software/bedtools/**
+  - tests/software/bedtools/slop/**
 
 bedtools_sort:
   - software/bedtools/sort/**
-  - tests/software/bedtools/**
+  - tests/software/bedtools/sort/**

tests/software/bedtools/genomecov/test.yml

@@ -5,4 +5,4 @@
     - bedtools_genomecov
   files:
     - path: output/bedtools/test.bed
-      md5sum: cc1bb317886e7df0a942b56f8a320d9c
+      md5sum: 8c8238ca3cdac7a0e650ade95ee941f4

tests/software/bedtools/slop/main.nf

@@ -4,12 +4,12 @@ nextflow.enable.dsl = 2
 
 include { BEDTOOLS_SLOP } from '../../../../software/bedtools/slop/main.nf' addParams( options: [args: '-l 15 r 30'] )
 
-
 workflow test_bedtools_slop {
     def input = []
     input = [ [ id:'test'],
-              file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true) ]
+              file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true),
+              file("${launchDir}/tests/data/bed/genome.sizes", checkIfExists: true) ]
 
     BEDTOOLS_SLOP( input )
-
 }
+

tests/software/bedtools/slop/test.yml

@@ -2,7 +2,7 @@
   command: nextflow run ./tests/software/bedtools/slop -entry test_bedtools_slop -c tests/config/nextflow.config
   tags:
     - bedtools
-    - bedtools_complement
+    - bedtools_slop
   files:
     - path: output/bedtools/test.slop.bed
       md5sum: 55a43973abb1a08ac57290ff44f6c502