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Fixed md5sum, fixed filters, fixed slop input

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sruthipsuresh 2021-01-29 21:57:24 -06:00
parent 78ac4435be
commit 93e414635b
4 changed files with 11 additions and 11 deletions
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12
.github/filters.yml vendored
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@ -147,24 +147,24 @@ ucsc_bedgraphtobigwig:
bedtools_complement: bedtools_complement:
- software/bedtools/complement/** - software/bedtools/complement/**
- tests/software/bedtools/complement** - tests/software/bedtools/complement/**
bedtools_genomecov: bedtools_genomecov:
- software/bedtools/genomecov/** - software/bedtools/genomecov/**
- tests/software/bedtools/** - tests/software/bedtools/genomecov/**
bedtools_intersect: bedtools_intersect:
- software/bedtools/intersect/** - software/bedtools/intersect/**
- tests/software/bedtools/** - tests/software/bedtools/intersect/**
bedtools_merge: bedtools_merge:
- software/bedtools/merge/** - software/bedtools/merge/**
- tests/software/bedtools/** - tests/software/bedtools/merge/**
bedtools_slop: bedtools_slop:
- software/bedtools/slop/** - software/bedtools/slop/**
- tests/software/bedtools/** - tests/software/bedtools/slop/**
bedtools_sort: bedtools_sort:
- software/bedtools/sort/** - software/bedtools/sort/**
- tests/software/bedtools/** - tests/software/bedtools/sort/**

2
tests/software/bedtools/genomecov/test.yml
View file

@ -5,4 +5,4 @@
- bedtools_genomecov - bedtools_genomecov
files: files:
- path: output/bedtools/test.bed - path: output/bedtools/test.bed
md5sum: cc1bb317886e7df0a942b56f8a320d9c md5sum: 8c8238ca3cdac7a0e650ade95ee941f4

6
tests/software/bedtools/slop/main.nf
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@ -4,12 +4,12 @@ nextflow.enable.dsl = 2
include { BEDTOOLS_SLOP } from '../../../../software/bedtools/slop/main.nf' addParams( options: [args: '-l 15 r 30'] ) include { BEDTOOLS_SLOP } from '../../../../software/bedtools/slop/main.nf' addParams( options: [args: '-l 15 r 30'] )
workflow test_bedtools_slop { workflow test_bedtools_slop {
def input = [] def input = []
input = [ [ id:'test'], input = [ [ id:'test'],
file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true) ] file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true),
file("${launchDir}/tests/data/bed/genome.sizes", checkIfExists: true) ]
BEDTOOLS_SLOP( input ) BEDTOOLS_SLOP( input )
} }

2
tests/software/bedtools/slop/test.yml
View file

@ -2,7 +2,7 @@
command: nextflow run ./tests/software/bedtools/slop -entry test_bedtools_slop -c tests/config/nextflow.config command: nextflow run ./tests/software/bedtools/slop -entry test_bedtools_slop -c tests/config/nextflow.config
tags: tags:
- bedtools - bedtools
- bedtools_complement - bedtools_slop
files: files:
- path: output/bedtools/test.slop.bed - path: output/bedtools/test.slop.bed
md5sum: 55a43973abb1a08ac57290ff44f6c502 md5sum: 55a43973abb1a08ac57290ff44f6c502