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removed params section & added description fasta

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SusiJo 2022-05-20 13:05:43 +02:00
parent 129270d7bc
commit f392c4bed5
1 changed files with 1 additions and 22 deletions
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23
modules/cnvkit/batch/meta.yml
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@ -11,27 +11,6 @@ tools:
homepage: https://cnvkit.readthedocs.io/en/stable/index.html homepage: https://cnvkit.readthedocs.io/en/stable/index.html
documentation: https://cnvkit.readthedocs.io/en/stable/index.html documentation: https://cnvkit.readthedocs.io/en/stable/index.html
licence: ["Apache-2.0"] licence: ["Apache-2.0"]
params:
- outdir:
type: string
description: |
The pipeline's output directory. By default, the module will
output files into `$params.outdir/<SOFTWARE>`
- publish_dir_mode:
type: string
description: |
Value for the Nextflow `publishDir` mode parameter.
Available: symlink, rellink, link, copy, copyNoFollow, move.
- enable_conda:
type: boolean
description: |
Run the module with Conda using the software specified
via the `conda` directive
- singularity_pull_docker_container:
type: boolean
description: |
Instead of directly downloading Singularity images for use with Singularity,
force the workflow to pull and convert Docker containers instead.
input: input:
- meta: - meta:
type: map type: map
@ -49,7 +28,7 @@ input:
- fasta: - fasta:
type: file type: file
description: | description: |
Input reference genome fasta file Input reference genome fasta file (only needed for cram_input and/or when normal_samples are provided)
- targetfile: - targetfile:
type: file type: file
description: | description: |