James A. Fellows Yates
b6ed584443
Update MOTUS/PROFILE module to output log file ( #1871 )
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* Add saving of stderr output as a log file as it contains summary statistics
* Apply suggestions from code review
2022-07-13 11:26:27 +02:00
James A. Fellows Yates
b02e648c22
Add MOTUS/MERGE ( #1734 )
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* Add motus/merge module, missing test yml
* Fix prefix
* Fix polymersase
* Update test meta.yml
* Try new version system
* Typo fix
* Clairfy docs for the version file
* Switch to directory auto detection
* Now with the change and not just meta
* Remove now unneeded input parameter from test
* Fix input type check
* Try adding db requirement to fix docker issue
* Update modules/motus/merge/main.nf
* Fix input
* Apply suggestions from code review
* Fix md5sums
* Replace debugging db location with actual
* Fix contains due to further varialbility
* Indenting
2022-07-07 09:47:41 +02:00
JIANHONG OU
6b960f0e75
fix the typo in motus_profile.
2022-05-12 09:20:32 -04:00
JIANHONG OU
a2dbef3de3
remove the wrong quotes for motus_profile.
2022-05-11 17:49:12 -04:00
JIANHONG OU
ae81311a78
fix the typo when using getExtension for motus_profile.
2022-05-11 14:23:09 -04:00
JIANHONG OU
b2542ee079
remove the mgc in metadata for motus_profile.
2022-05-08 06:21:26 -04:00
JIANHONG OU
9b50036e9b
add test_bam and -m parameter for motus_profile
2022-05-06 08:56:42 -04:00
JIANHONG OU
3499314b96
Update modules/motus/profile/meta.yml
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Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-05-06 08:19:47 -04:00
JIANHONG OU
4df57b03bd
Update modules/motus/profile/meta.yml
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Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-05-06 08:11:58 -04:00
JIANHONG OU
6b2f16a0f4
Update modules/motus/profile/meta.yml
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Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-05-06 08:11:39 -04:00
JIANHONG OU
baeb2bd1c1
Update modules/motus/profile/main.nf
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Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-05-06 08:11:29 -04:00
JIANHONG OU
4497eb1734
Update modules/motus/profile/main.nf
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Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-05-06 08:11:22 -04:00
JIANHONG OU
e391c65510
fix the version issue for motus_profile.
2022-05-05 15:35:31 -04:00
JIANHONG OU
fb5c5d310a
update motus module.
2022-05-05 13:38:46 -04:00
JIANHONG OU
0f24e4dcff
add input database and intermediate bam file.
2022-05-02 08:37:12 -04:00
JIANHONG OU
98d318c0e0
init
2022-04-24 07:55:17 -04:00
