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Author	SHA1	Message	Date
Candice	08d26794b5	luslab-umitools | Created yml file for dedup in umi_tools	2020-06-02 19:02:18 +02:00
Candice	3aace7c0c2	luslab-umitools | Added sample_id options in dedup	2020-06-02 18:45:55 +02:00
Candice	6970d25b59	luslab-umitools | Added basic options to dedup tool in umi_tools	2020-06-02 17:23:54 +02:00
Candice	4656667374	luslab-umitools | Renamed params and changed relative paths	2020-06-01 16:41:47 +02:00
Candice	ff0265fda4	luslab-umitools | Added input folder in dedup/test	2020-06-01 16:21:29 +02:00
Candice	e46db6d31d	luslab-umitools | Created conda environment for umi_tools	2020-06-01 16:14:13 +02:00
Candice	5f82d0a702	luslab-umitools | Customized Dockerfile for umi_tools	2020-06-01 16:13:30 +02:00
Candice	7cc1319801	luslab-umitools | Renamed dedup.nf to main.nf	2020-06-01 15:18:49 +02:00
Candice	e00b7bd91e	luslab-umitools | Added parameter overriding function to umi_tools	2020-06-01 15:02:21 +02:00
Candice	549f81e4ea	luslab-umitools | Created a Dockerfile for umi_tools module	2020-06-01 14:52:43 +02:00
Candice	bfdccfe1b9	luslab-umitools | Initialized test.nf	2020-06-01 14:40:50 +02:00
Candice	ab2d819df3	luslab-umitools | Renamed umi-tools.nf to dedup.nf	2020-06-01 14:40:50 +02:00
Candice	ff243acf63	luslab-umitools | Created umitool.nf file in the dedup folder	2020-06-01 14:40:50 +02:00
Candice	baa5805350	luslab-umitools | Created test.nf and test folder in umi_tools/dedup	2020-06-01 14:40:50 +02:00
Alexander Peltzer	9dee710b04	Merge pull request #25 from piotr-faba-ardigen/add_cutadapt_tool ... Add cutadapt tool	2020-03-16 18:46:00 +01:00
Harshil Patel	7738dbe4df	Merge pull request #26 from nf-core/readme-update-modules ... Propose module organization	2020-03-16 14:49:24 +00:00
Harshil Patel	5e71d61f27	Update README.md	2020-03-16 14:47:20 +00:00
Harshil Patel	d553406fa5	Update README.md	2020-03-16 14:47:11 +00:00
Harshil Patel	300e89c4dc	Update README.md	2020-03-16 14:47:03 +00:00
Alexander Peltzer	95d57bcef2	Apply suggestions from code review ... Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>	2020-03-16 15:42:52 +01:00
Alexander Peltzer	771e53625b	Update README.md	2020-03-16 14:42:22 +01:00
Alexander Peltzer	05b4bbe8a1	Update README.md	2020-03-16 14:39:27 +01:00
Alexander Peltzer	f091e174c0	Update README.md	2020-03-16 14:37:07 +01:00
Alexander Peltzer	9753e803e0	Update README.md	2020-03-16 14:27:08 +01:00
Alexander Peltzer	4303ec700c	Propose module organization ... See above changes to readme :_)	2020-03-16 14:06:03 +01:00
Piotr Faba	6fd86ad9e5	2 tests	2020-03-06 14:56:33 +00:00
Piotr Faba	fa134a1196	fix path error	2020-03-06 14:54:26 +00:00
Piotr Faba	2646e55e2b	get test working	2020-03-06 14:50:29 +00:00
Piotr Faba	660be04708	fix test	2020-03-06 14:41:37 +00:00
Piotr Faba	36cad50593	test submodules checkout	2020-03-06 14:38:49 +00:00
Piotr Faba	977a9b3ee8	test fix	2020-03-06 14:34:34 +00:00
Piotr Faba	f33dd2d2e9	add ci test	2020-03-06 14:31:44 +00:00
Piotr Faba	c90474202c	update meta	2020-03-06 14:23:32 +00:00
Piotr Faba	1c941ef8d6	Update test-data commit and references	2020-03-06 13:59:14 +00:00
Piotr Faba	490eca706c	single and paired end supported	2020-03-06 13:23:12 +00:00
Piotr Faba	88bc7dcdd8	the module is working in test	2020-03-06 10:51:46 +00:00
Piotr Faba	97d9ae76f0	add cutadapt module	2020-03-05 15:56:11 +00:00
Maxime Garcia	f62fad63ca	Merge pull request #12 from MaxUlysse/dev ... Add some modules	2020-02-10 17:10:35 +01:00
Maxime Garcia	48be154434	Update tools/bwa/index/meta.yml ... Co-Authored-By: Olga Botvinnik <olga.botvinnik@gmail.com>	2020-01-24 10:39:52 +01:00
MaxUlysse	7fbfd2d6cb	add samtools faidx to index fasta file	2020-01-23 11:36:21 +01:00
MaxUlysse	b8dda67338	add htslib tabix to index bgzipped vcf files	2020-01-23 11:35:49 +01:00
MaxUlysse	9db873c3bc	add gatk dict to create dictionnary from fasta file	2020-01-23 11:35:19 +01:00
MaxUlysse	a69aebd01b	fix index process	2020-01-23 10:19:00 +01:00
MaxUlysse	ad3c14a964	fix typo	2020-01-21 11:25:13 +01:00
MaxUlysse	1f46499e3b	add bwa index	2020-01-21 11:24:32 +01:00
Phil Ewels	a88b867498	Merge pull request #10 from ewels/master ... Fix trim galore process name	2019-12-06 11:24:45 +01:00
Phil Ewels	5fbde1c69d	Fix trim galore process name	2019-12-06 11:24:07 +01:00
Phil Ewels	4eb1428931	Added empty test_import.nf file	2019-12-06 10:38:57 +01:00
Maxime Garcia	9fd356468d	Merge pull request #9 from ewels/master ... Added samtools, restructured directory structures	2019-12-06 10:37:42 +01:00
Phil Ewels	c77ea13d35	Fixed FastQC tests with submodule	2019-12-06 10:15:49 +01:00