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Author SHA1 Message Date
Candice
08d26794b5 luslab-umitools | Created yml file for dedup in umi_tools 2020-06-02 19:02:18 +02:00
Candice
3aace7c0c2 luslab-umitools | Added sample_id options in dedup 2020-06-02 18:45:55 +02:00
Candice
6970d25b59 luslab-umitools | Added basic options to dedup tool in umi_tools 2020-06-02 17:23:54 +02:00
Candice
4656667374 luslab-umitools | Renamed params and changed relative paths 2020-06-01 16:41:47 +02:00
Candice
ff0265fda4 luslab-umitools | Added input folder in dedup/test 2020-06-01 16:21:29 +02:00
Candice
e46db6d31d luslab-umitools | Created conda environment for umi_tools 2020-06-01 16:14:13 +02:00
Candice
5f82d0a702 luslab-umitools | Customized Dockerfile for umi_tools 2020-06-01 16:13:30 +02:00
Candice
7cc1319801 luslab-umitools | Renamed dedup.nf to main.nf 2020-06-01 15:18:49 +02:00
Candice
e00b7bd91e luslab-umitools | Added parameter overriding function to umi_tools 2020-06-01 15:02:21 +02:00
Candice
549f81e4ea luslab-umitools | Created a Dockerfile for umi_tools module 2020-06-01 14:52:43 +02:00
Candice
bfdccfe1b9 luslab-umitools | Initialized test.nf 2020-06-01 14:40:50 +02:00
Candice
ab2d819df3 luslab-umitools | Renamed umi-tools.nf to dedup.nf 2020-06-01 14:40:50 +02:00
Candice
ff243acf63 luslab-umitools | Created umitool.nf file in the dedup folder 2020-06-01 14:40:50 +02:00
Candice
baa5805350 luslab-umitools | Created test.nf and test folder in umi_tools/dedup 2020-06-01 14:40:50 +02:00
Alexander Peltzer
9dee710b04
Merge pull request #25 from piotr-faba-ardigen/add_cutadapt_tool 
Add cutadapt tool
 2020-03-16 18:46:00 +01:00
Harshil Patel
7738dbe4df
Merge pull request #26 from nf-core/readme-update-modules 
Propose module organization
 2020-03-16 14:49:24 +00:00
Harshil Patel
5e71d61f27
Update README.md 2020-03-16 14:47:20 +00:00
Harshil Patel
d553406fa5
Update README.md 2020-03-16 14:47:11 +00:00
Harshil Patel
300e89c4dc
Update README.md 2020-03-16 14:47:03 +00:00
Alexander Peltzer
95d57bcef2
Apply suggestions from code review 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-03-16 15:42:52 +01:00
Alexander Peltzer
771e53625b
Update README.md 2020-03-16 14:42:22 +01:00
Alexander Peltzer
05b4bbe8a1
Update README.md 2020-03-16 14:39:27 +01:00
Alexander Peltzer
f091e174c0
Update README.md 2020-03-16 14:37:07 +01:00
Alexander Peltzer
9753e803e0
Update README.md 2020-03-16 14:27:08 +01:00
Alexander Peltzer
4303ec700c
Propose module organization 
See above changes to readme :_)
 2020-03-16 14:06:03 +01:00
Piotr Faba
6fd86ad9e5 2 tests 2020-03-06 14:56:33 +00:00
Piotr Faba
fa134a1196 fix path error 2020-03-06 14:54:26 +00:00
Piotr Faba
2646e55e2b get test working 2020-03-06 14:50:29 +00:00
Piotr Faba
660be04708 fix test 2020-03-06 14:41:37 +00:00
Piotr Faba
36cad50593 test submodules checkout 2020-03-06 14:38:49 +00:00
Piotr Faba
977a9b3ee8 test fix 2020-03-06 14:34:34 +00:00
Piotr Faba
f33dd2d2e9 add ci test 2020-03-06 14:31:44 +00:00
Piotr Faba
c90474202c update meta 2020-03-06 14:23:32 +00:00
Piotr Faba
1c941ef8d6 Update test-data commit and references 2020-03-06 13:59:14 +00:00
Piotr Faba
490eca706c single and paired end supported 2020-03-06 13:23:12 +00:00
Piotr Faba
88bc7dcdd8 the module is working in test 2020-03-06 10:51:46 +00:00
Piotr Faba
97d9ae76f0 add cutadapt module 2020-03-05 15:56:11 +00:00
Maxime Garcia
f62fad63ca
Merge pull request #12 from MaxUlysse/dev 
Add some modules
 2020-02-10 17:10:35 +01:00
Maxime Garcia
48be154434
Update tools/bwa/index/meta.yml 
Co-Authored-By: Olga Botvinnik <olga.botvinnik@gmail.com>
 2020-01-24 10:39:52 +01:00
MaxUlysse
7fbfd2d6cb add samtools faidx to index fasta file 2020-01-23 11:36:21 +01:00
MaxUlysse
b8dda67338 add htslib tabix to index bgzipped vcf files 2020-01-23 11:35:49 +01:00
MaxUlysse
9db873c3bc add gatk dict to create dictionnary from fasta file 2020-01-23 11:35:19 +01:00
MaxUlysse
a69aebd01b fix index process 2020-01-23 10:19:00 +01:00
MaxUlysse
ad3c14a964 fix typo 2020-01-21 11:25:13 +01:00
MaxUlysse
1f46499e3b add bwa index 2020-01-21 11:24:32 +01:00
Phil Ewels
a88b867498
Merge pull request #10 from ewels/master 
Fix trim galore process name
 2019-12-06 11:24:45 +01:00
Phil Ewels
5fbde1c69d Fix trim galore process name 2019-12-06 11:24:07 +01:00
Phil Ewels
4eb1428931 Added empty test_import.nf file 2019-12-06 10:38:57 +01:00
Maxime Garcia
9fd356468d
Merge pull request #9 from ewels/master 
Added samtools, restructured directory structures
 2019-12-06 10:37:42 +01:00
Phil Ewels
c77ea13d35 Fixed FastQC tests with submodule 2019-12-06 10:15:49 +01:00