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Author	SHA1	Message	Date
drpatelh	2c9cd2d89b	Update main script	2020-08-06 12:00:38 +01:00
drpatelh	83b61fcccd	Update README	2020-08-06 12:00:24 +01:00
drpatelh	530b4c1bd9	Add test directory	2020-08-06 11:32:38 +01:00
drpatelh	b7d0ee043e	Initial commit	2020-08-06 11:32:18 +01:00
drpatelh	f021ab119b	Initial commit	2020-08-06 11:32:11 +01:00
drpatelh	ab512be9aa	Initial commit	2020-08-06 11:31:52 +01:00
Harshil Patel	d286fdf995	Merge pull request #54 from drpatelh/master ... Hard copy functions.nf	2020-08-05 18:39:53 +01:00
drpatelh	f315a7b3c4	Hard copy files	2020-08-05 18:38:27 +01:00
Harshil Patel	1073ea47fa	Merge pull request #53 from drpatelh/master ... Add in chipseq modules	2020-08-05 17:46:59 +01:00
drpatelh	71a6a9decc	Fix markdownlint	2020-08-05 17:46:23 +01:00
drpatelh	9988dacfc6	Fix yaml lint	2020-08-05 17:32:47 +01:00
drpatelh	ab8a9025a0	Copy across test data and docs for trimgalore	2020-08-05 17:28:25 +01:00
drpatelh	50fce8b3cf	Copy across test data and docs for samtools sort	2020-08-05 17:28:09 +01:00
drpatelh	de9d33da12	Copy across test data and docs for samtools index	2020-08-05 17:27:58 +01:00
drpatelh	fb697eca2f	Copy across test data and docs for bwa mem	2020-08-05 17:27:42 +01:00
drpatelh	da4dcee934	Copy across test data and docs for bwa index	2020-08-05 17:27:28 +01:00
drpatelh	4f590ff239	Remove some more modules	2020-08-05 17:25:34 +01:00
drpatelh	1edc58a36b	Pinch docs and delete redundant modules	2020-08-05 17:24:40 +01:00
drpatelh	5d224740cd	Change path	2020-08-05 17:17:58 +01:00
drpatelh	137db462a7	Add samtools	2020-08-05 17:17:47 +01:00
drpatelh	993d0d5743	Add picard	2020-08-05 17:17:41 +01:00
drpatelh	9d168cf29e	Add deeptools	2020-08-05 17:17:34 +01:00
drpatelh	f481899049	Add subread	2020-08-05 17:17:19 +01:00
drpatelh	20e6d847a3	Add trimgalore	2020-08-05 17:17:12 +01:00
drpatelh	c5bb9c2fde	Add macs2	2020-08-05 17:17:05 +01:00
drpatelh	f61ad7506a	Add homer	2020-08-05 17:16:56 +01:00
drpatelh	71d7aecf74	Add preseq	2020-08-05 17:16:45 +01:00
drpatelh	e94676a2b2	Add phantompeakqualtools	2020-08-05 17:16:34 +01:00
drpatelh	6fe4ec16df	Add ucsc	2020-08-05 17:16:23 +01:00
drpatelh	3b1669c317	Add bwa mem	2020-08-05 17:16:08 +01:00
drpatelh	7938a60a02	Add bwa index	2020-08-05 17:15:56 +01:00
drpatelh	7f5ca56413	Soft-link functions to top-level module dir	2020-08-05 17:03:04 +01:00
Harshil Patel	7f13463d0b	Merge pull request #52 from drpatelh/master ... Why isn't GitHub API refreshing with these changes?!	2020-08-05 16:36:25 +01:00
drpatelh	4a65c77e58	deprecated/trim_galore/Dockerfile	2020-08-05 16:34:07 +01:00
drpatelh	3ec4f63fd8	Use correct link to fastqc	2020-08-05 16:28:42 +01:00
Harshil Patel	2b6a68260b	Merge pull request #51 from drpatelh/master ... Test latest FastQC implementation	2020-08-05 16:10:41 +01:00
drpatelh	c08e6959a5	Reorganise everything	2020-08-05 16:09:25 +01:00
Harshil Patel	88eac382be	Merge pull request #41 from MaxUlysse/bwa-mem2 ... add module for bwa-mem2 index	2020-08-05 15:45:43 +01:00
Harshil Patel	95a91032ce	Merge pull request #42 from JoseEspinosa/bedtools_dev ... Add modules complement, genomecov, intersect, merge, sort for bedtools	2020-08-05 15:45:17 +01:00
Harshil Patel	b3145e3f19	Merge pull request #50 from nf-core/minor-style-improvements ... Minor style improvements	2020-07-27 12:04:04 +01:00
Paolo Di Tommaso	70daf8be30	Minor style improvents ... This commit provides a minor refactoring with som Nextflow code style improvments: - Replaces `.toGiga()` with `.giga` - Replaces `tag { foo }` with `tag "$foo"` - Move publishDir before input declarations. Directives should be before the first input. Tho this is not enforced, it may be in future versions. - Replaces input `file` with `path` - Remove unnecessary parentheses	2020-07-27 12:11:42 +02:00
Phil Ewels	6dfb9f02c9	Merge pull request #47 from stevekm/fastqc-unit-test ... move md5 function to lib dir and symlink to fastqc test dir, rename m…	2020-07-23 11:46:10 +02:00
Phil Ewels	dbf5b267b1	Fix code format linting	2020-07-23 11:43:48 +02:00
Phil Ewels	3406ed4da0	Merge branch 'master' into fastqc-unit-test	2020-07-17 16:00:59 +02:00
Phil Ewels	c2aef67408	Merge pull request #49 from ewels/fix-actions ... Fix a bunch of stuff in GitHub Actions test workflows	2020-07-17 16:00:23 +02:00
Phil Ewels	f01b3f13a6	Remove debugging statement	2020-07-17 16:00:08 +02:00
Phil Ewels	2d1252c804	FastQC tests - disable hash check	2020-07-17 11:30:28 +02:00
Phil Ewels	dcc4beacb1	Fix FastQC test	2020-07-17 11:26:50 +02:00
Phil Ewels	9b4634a426	Use latest edge version of NXF for FastQC test	2020-07-17 10:35:17 +02:00
Phil Ewels	e71bb92534	Workflows - trigger on change to workflow and test data too	2020-07-16 17:14:57 +02:00