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Author	SHA1	Message	Date
Simone Carpanzano	162f8edf54	Merge branch 'master' into firstbranch	2022-05-04 16:35:25 +02:00
Carpanzano	6b8ca501ed	fixing suggestions from PR	2022-05-04 16:34:52 +02:00
nvnieuwk	486cc1d142	Merge pull request #1611 from nvnieuwk/split-hap.py-into-two-modules ... Split hap.py into two parts	2022-05-04 15:49:31 +02:00
Nicolas Vannieuwkerke	42bdc5471e	Changed the pytest location of happy	2022-05-04 15:40:34 +02:00
Nicolas Vannieuwkerke	f875aec46b	Split the module into two parts	2022-05-04 15:29:48 +02:00
nvnieuwk	994cd6d171	Merge pull request #1610 from nvnieuwk/new-module-hap.py ... New module hap.py	2022-05-04 15:00:45 +02:00
Nicolas Vannieuwkerke	3c66138672	Linting issue + removed the contains lines	2022-05-04 14:49:17 +02:00
Nicolas Vannieuwkerke	5889d6c923	Another possible fix for the pytest issues	2022-05-04 14:46:15 +02:00
Nicolas Vannieuwkerke	583ea13800	Another try to fix the pytest issues	2022-05-04 14:22:55 +02:00
Nicolas Vannieuwkerke	17dbd2bb82	Linting issue fixed	2022-05-04 14:18:56 +02:00
Nicolas Vannieuwkerke	505ab03803	fixed a description	2022-05-04 14:14:53 +02:00
Nicolas Vannieuwkerke	c1393bf999	Possible fix for the pytest errors?	2022-05-04 14:14:01 +02:00
Nicolas Vannieuwkerke	177a7e49f2	Fixed a linting issue	2022-05-04 14:06:42 +02:00
Nicolas Vannieuwkerke	000b8ee2e0	Merge branch 'new-module-hap.py' of github.com:nvnieuwk/modules into new-module-hap.py	2022-05-04 14:05:23 +02:00
Nicolas Vannieuwkerke	065a5d6a7f	Fixed a linting issue	2022-05-04 14:05:21 +02:00
nvnieuwk	c9808cb97f	Merge branch 'master' into new-module-hap.py	2022-05-04 14:01:02 +02:00
Nicolas Vannieuwkerke	37338ecee3	Finished the module	2022-05-04 14:00:02 +02:00
Nicolas Vannieuwkerke	c517ce9b4d	Added the module and some simple testing	2022-05-04 13:42:12 +02:00
Chris Cheshire	7949c1f048	Merge pull request #1607 from luslab/expected_error_fix ... Bowtie2 - Added support for large indexes and improved error reporting	2022-05-03 22:27:45 +01:00
Chris Cheshire	79e64cdd1f	Merge branch 'master' into expected_error_fix	2022-05-03 22:21:28 +01:00
nvnieuwk	1f906a7c6a	Merge pull request #1608 from nvnieuwk/vardict-java-update ... Small update to vardict-java	2022-05-03 15:37:52 +02:00
Nicolas Vannieuwkerke	96d4a31cc1	Moved the BED file to the main tuple	2022-05-03 15:31:05 +02:00
Chris Cheshire	6f35537d40	Merge branch 'master' into expected_error_fix	2022-05-03 12:21:51 +01:00
Chris Cheshire	1baf143607	Merge pull request #1548 from rpetit3/rp3-add-shigatyper ... add module for shigatyper	2022-05-03 12:21:43 +01:00
Chris Cheshire	829183ee84	Merge branch 'master' into rp3-add-shigatyper	2022-05-03 12:16:54 +01:00
Chris Cheshire	b3ee6384e6	Merge pull request #1604 from nf-core/add-slimfastq ... feat: add module for slimfastq	2022-05-03 12:16:41 +01:00
Chris Cheshire	6015478b72	Merge branch 'master' into add-slimfastq	2022-05-03 12:11:19 +01:00
Chris Cheshire	d7fb969a74	Merge branch 'master' into rp3-add-shigatyper	2022-05-03 12:10:23 +01:00
Chris Cheshire	40e6bd9dc1	bowtie2|fix tags error	2022-05-03 12:07:04 +01:00
Chris Cheshire	0f1ee7e50d	bowtie2|test fixes	2022-05-03 12:04:51 +01:00
Chris Cheshire	61f68913fe	Merge branch 'master' into expected_error_fix	2022-05-03 11:49:35 +01:00
Chris Cheshire	768073be63	bowtie2|Added support for large indexes	2022-05-03 11:46:19 +01:00
James A. Fellows Yates	b61cdc7355	Merge pull request #1570 from nvnieuwk/vardict-java ... new_module:vardict-java	2022-05-03 10:26:41 +02:00
nvnieuwk	f85787b19e	Merge branch 'master' into vardict-java	2022-05-03 10:17:04 +02:00
nvnieuwk	8187641280	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:45 +02:00
nvnieuwk	11c6faf433	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:36 +02:00
nvnieuwk	01085b3e09	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:30 +02:00
nvnieuwk	1609dfc96d	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:20 +02:00
nvnieuwk	3cdbdf50fc	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:14 +02:00
nvnieuwk	2dff193b54	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:15:59 +02:00
nvnieuwk	7c89af359c	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:15:51 +02:00
Nicolas Vannieuwkerke	49ba3adbde	Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java	2022-05-03 10:15:33 +02:00
Nicolas Vannieuwkerke	d33253513f	put the version on top of the file	2022-05-03 10:15:30 +02:00
Lucpen	3891eca3c3	Merge pull request #1596 from nf-core/adding_stub_to_modules ... feat added stub to modules gatk4_mergebamalignment_mutect2_revertsam_samtofastq, samtools_view	2022-05-03 10:13:25 +02:00
nvnieuwk	278d41b6bf	Merge branch 'master' into vardict-java	2022-05-03 09:59:05 +02:00
Ramprasad Neethiraj	6f787aea71	Merge branch 'master' into adding_stub_to_modules	2022-05-03 09:43:16 +02:00
Lauri Mesilaakso	218400b632	Merge pull request #1600 from Genomic-Medicine-Linkoping/add_handling_of_alternative_fn_suffix_for_metaphlan3 ... Add additional handling of fq.gz file name suffix	2022-05-03 09:50:09 +03:00
Lauri Mesilaakso	77054795fb	Merge branch 'master' into add_handling_of_alternative_fn_suffix_for_metaphlan3	2022-05-03 09:38:51 +03:00
Nicolas Vannieuwkerke	71c5d21374	ran prettier	2022-05-03 08:34:12 +02:00
Nicolas Vannieuwkerke	9127f92ddd	Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java	2022-05-03 08:29:50 +02:00