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Author	SHA1	Message	Date
Anders Goncalves da Silva	06770d5f02	Specify the exact bioconda recipe build ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 10:01:25 -08:00
Anders Goncalves da Silva	362a630f8b	Change suffix of mpileup ouput file ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 10:00:54 -08:00
Anders Goncalves da Silva	884c4658b8	Make mpileup saving optional ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 10:00:22 -08:00
Jose Espinosa-Carrasco	1e771ac8a0	Merge pull request #164 from drpatelh/fixes ... Add missing build ids and rename *.txt channels	2021-02-10 14:19:00 +01:00
drpatelh	b9afca2b05	Underscore not .	2021-02-10 12:53:17 +00:00
drpatelh	d2508e3c03	Amend prefix for bcftools stats	2021-02-10 12:51:47 +00:00
Harshil Patel	9069ed5921	Merge pull request #165 from drpatelh/pangolin ... Bump Pangolin version and minor amendments	2021-02-10 11:22:47 +00:00
drpatelh	e63279e6a2	Pin pangoLearn version	2021-02-10 10:28:27 +00:00
drpatelh	1d00a4a11c	Update md5sum	2021-02-09 23:31:39 +00:00
drpatelh	79d730f2c3	Change output name	2021-02-09 23:27:08 +00:00
drpatelh	7f629bca45	OCDness	2021-02-09 23:26:55 +00:00
drpatelh	b03846600d	Tidy up	2021-02-09 23:26:45 +00:00
drpatelh	6795fe04b8	Rename output channel	2021-02-09 23:26:18 +00:00
drpatelh	2b9129b3f9	Change txt channel output	2021-02-09 23:09:22 +00:00
drpatelh	d50d070c06	Change txt channel output	2021-02-09 23:09:18 +00:00
drpatelh	0b33b6d081	Add missing build ids	2021-02-09 23:03:13 +00:00
Harshil Patel	6765db81be	Merge pull request #163 from JoseEspinosa/fix_conda_build ... Add conda build id	2021-02-09 22:47:15 +00:00
JoseEspinosa	e8dc199dc8	Adding conda build to blast modules	2021-02-09 23:04:12 +01:00
JoseEspinosa	2fa14f2ec8	Adding conda build to bcftools modules	2021-02-09 23:00:19 +01:00
Harshil Patel	6319fb242e	Merge pull request #161 from JoseEspinosa/bedtools_getfasta ... Add bedtools getfasta module	2021-02-09 21:42:16 +00:00
Harshil Patel	28866f3dc7	Update tests/software/bedtools/maskfasta/main.nf	2021-02-09 21:36:38 +00:00
Harshil Patel	3f431014a4	Update software/bedtools/getfasta/main.nf	2021-02-09 21:34:40 +00:00
Harshil Patel	aaa088dba8	Update tests/software/bedtools/getfasta/main.nf	2021-02-09 21:34:29 +00:00
Anders Goncalves da Silva	8f546a1f95	Add ivar consensus	2021-02-09 10:26:35 -08:00
JoseEspinosa	68b85d9191	Merge remote-tracking branch 'upstream/master' into bedtools_getfasta	2021-02-09 18:23:24 +01:00
Jose Espinosa-Carrasco	1baca83f00	Merge pull request #160 from JoseEspinosa/blast_blastn ... Add blast blastn module	2021-02-09 18:22:23 +01:00
JoseEspinosa	1e9b88b33c	Fixing trailing slashes in .github/filters.yml	2021-02-09 18:16:16 +01:00
JoseEspinosa	e118bc049a	Add bedtools getfasta module	2021-02-09 17:56:51 +01:00
JoseEspinosa	7536b386a5	Correct channel declaration on bedtools_maskfasta	2021-02-09 17:56:01 +01:00
JoseEspinosa	9a11e90892	Fixing tests	2021-02-09 17:07:23 +01:00
JoseEspinosa	12ae7b0bff	Adding blast blastn module	2021-02-09 16:58:36 +01:00
Harshil Patel	25db9bc648	Merge pull request #159 from JoseEspinosa/blast_makeblastdb ... Add blast makeblastdb module	2021-02-09 15:36:25 +00:00
JoseEspinosa	d0f09e26b6	Adding blast makeblastdb module to filters.yml	2021-02-09 15:47:53 +01:00
JoseEspinosa	c23b355b35	Add blast makeblastdb module	2021-02-09 15:44:34 +01:00
Harshil Patel	678f104097	Update README.md	2021-02-09 13:27:30 +00:00
Harshil Patel	4113e44141	Merge pull request #158 from JoseEspinosa/untar ... Add untar module	2021-02-09 11:28:57 +00:00
JoseEspinosa	c93e96101a	Add untar module	2021-02-09 11:50:32 +01:00
Harshil Patel	889fced870	Merge pull request #157 from JoseEspinosa/gunzip ... Add gunzip module	2021-02-09 10:40:46 +00:00
Harshil Patel	3ec8a2af02	Merge pull request #154 from nf-core/doc-fixs ... docs: Update README with minor edits	2021-02-09 10:39:17 +00:00
JoseEspinosa	20771ae1bc	Remove meta from input/output meta.yml	2021-02-09 11:02:31 +01:00
JoseEspinosa	b09416a0d0	Correcting meta.yml	2021-02-09 10:51:57 +01:00
JoseEspinosa	9b65961828	Fix file output path on test	2021-02-09 10:22:50 +01:00
JoseEspinosa	f7f06dd6e8	Add gunzip module	2021-02-09 10:05:55 +01:00
Edmund Miller	4c30f2943e	docs: Use one tag in all of the examples ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-08 20:13:11 -06:00
Harshil Patel	46e5df2cf7	Merge pull request #151 from drpatelh/bedtools ... Follow up fixes for bedtools modules added in #79	2021-02-09 01:54:31 +00:00
Edmund Miller	9637a8189a	docs: Update README with minor edits	2021-02-08 19:46:42 -06:00
Harshil Patel	84cf5ea2ef	Merge pull request #153 from JoseEspinosa/bedtools_maskfasta ... Add bedtools maskfasta module	2021-02-08 23:11:00 +00:00
Harshil Patel	132dabbbb6	Update tests/data/bed/C.bed	2021-02-08 23:03:26 +00:00
JoseEspinosa	1b3e5e0283	Fixing module name in test.yml	2021-02-08 23:45:01 +01:00
JoseEspinosa	02d10c25a3	Add bedtools maskfasta module	2021-02-08 23:41:10 +01:00