JoseEspinosa
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58d28ed896
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Fix copy/paste error :P
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2021-02-08 21:57:31 +01:00 |
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JoseEspinosa
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f8882de456
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Renaming test ymls just to: software tool
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2021-02-08 21:56:53 +01:00 |
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JoseEspinosa
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7a0ba85843
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Adding again bcftools modules to filters after solving conflict
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2021-02-08 18:10:50 +01:00 |
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JoseEspinosa
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f4e322f88d
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Merging upstream changes
# Conflicts:
# .github/filters.yml
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2021-02-08 18:09:41 +01:00 |
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JoseEspinosa
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4fa38ebb7a
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Separate test data to break dependencies between bcftools modules tests
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2021-02-08 16:51:21 +01:00 |
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JoseEspinosa
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83cc25860d
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Rearranging tests to test each module separately
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2021-02-08 15:16:51 +01:00 |
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JoseEspinosa
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fe412797dd
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Adressing general comments on PR #134
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2021-02-08 15:11:36 +01:00 |
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drpatelh
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d9443043ab
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Add white background logo for repo
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2021-02-08 11:22:03 +00:00 |
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Harshil Patel
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d29ef5c52c
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Merge pull request #152 from drpatelh/docs
Update template module and add more docs for testing and finding containers
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2021-02-08 10:31:00 +00:00 |
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JoseEspinosa
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5071bf5914
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Merge remote-tracking branch 'upstream/master' into bcftools_viralrecon
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2021-02-08 10:45:57 +01:00 |
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drpatelh
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c9cfdd31f3
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Fix barfing linters
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2021-02-08 00:57:06 +00:00 |
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drpatelh
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c92fe8701a
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Add docs about docs
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2021-02-08 00:53:32 +00:00 |
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drpatelh
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41dfaf2a19
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Use Nextflow comments
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2021-02-08 00:44:45 +00:00 |
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drpatelh
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56752b90f5
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Fix indents
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2021-02-08 00:40:36 +00:00 |
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drpatelh
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a8efd112b9
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Add docs about finding and adding containers
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2021-02-08 00:35:50 +00:00 |
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drpatelh
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d4b278eb65
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Update docs
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2021-02-08 00:01:48 +00:00 |
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drpatelh
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9cb958ca25
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Update commands for pytest
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2021-02-07 23:50:21 +00:00 |
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drpatelh
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07f62a76c5
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Re-word CI tests
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2021-02-07 23:40:26 +00:00 |
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drpatelh
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6bbb71a022
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Update link to tests template
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2021-02-07 23:26:54 +00:00 |
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drpatelh
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eeb496cf5c
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Fix filters
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2021-02-07 23:23:08 +00:00 |
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drpatelh
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83a50d8ae0
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Rename SOFTWARE_TOOL to TOOL_SUBTOOL
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2021-02-07 23:20:53 +00:00 |
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Harshil Patel
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dcabde6b85
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Merge pull request #139 from nf-core/testing-docs
Add documentation for Testing
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2021-02-07 22:35:01 +00:00 |
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drpatelh
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a34d74188d
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Really fix Editor Config
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2021-02-07 21:49:20 +00:00 |
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drpatelh
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ef0a984cc0
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Fix Editor config tests
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2021-02-07 21:44:45 +00:00 |
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drpatelh
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418bd64e80
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Test module with Conda
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2021-02-07 21:33:42 +00:00 |
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drpatelh
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5779b180da
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Fix bedtools sort module
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2021-02-07 21:32:43 +00:00 |
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drpatelh
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f3b5af4ed5
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Fix bedtools slip module
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2021-02-07 21:32:20 +00:00 |
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drpatelh
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38964ecfc0
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Fix bedtools intersect module
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2021-02-07 21:32:01 +00:00 |
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drpatelh
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a37b116186
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Fix bedtools merge module
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2021-02-07 21:31:39 +00:00 |
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drpatelh
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4564ef0e54
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Fix bedtools genomecov module
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2021-02-07 21:31:21 +00:00 |
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drpatelh
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a0c08e0c06
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Fix bedtools complement module
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2021-02-07 21:31:02 +00:00 |
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drpatelh
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a9102c329c
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Fix bedtools complement module
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2021-02-07 20:55:12 +00:00 |
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Harshil Patel
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e4adb8ab53
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Merge pull request #79 from Functional-Genomics-Lab/bedtools-general
Bring bedtools up to speed
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2021-02-07 20:49:17 +00:00 |
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Harshil Patel
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0393d39105
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Update tests/software/bedtools/complement/main.nf
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2021-02-07 20:35:51 +00:00 |
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Harshil Patel
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5269c1ec60
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Update tests/software/bedtools/intersect/main.nf
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2021-02-07 20:35:12 +00:00 |
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Harshil Patel
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8841af1267
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Update tests/software/bedtools/merge/main.nf
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2021-02-07 20:34:30 +00:00 |
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Harshil Patel
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b068f2fc53
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Update tests/software/bedtools/sort/main.nf
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2021-02-07 20:33:02 +00:00 |
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Harshil Patel
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b260192942
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Merge pull request #149 from heuermh/minimap2
Add minimap2 align module
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2021-02-07 16:37:26 +00:00 |
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Michael L Heuer
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35ed09b06e
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Fix CI test failure
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2021-02-05 11:41:36 -06:00 |
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Michael L Heuer
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6b873d7d33
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Remove single_end if/else
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2021-02-05 11:35:11 -06:00 |
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Edmund Miller
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e51d0bdf5e
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Apply suggestions from code review
Co-authored-by: Kevin Menden <kevin.menden@t-online.de>
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2021-02-05 09:26:45 -06:00 |
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Harshil Patel
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31520fce97
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Update software/minimap2/align/main.nf
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2021-02-05 10:45:34 +00:00 |
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Kevin Menden
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17dd0415f2
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Merge pull request #146 from heuermh/bandage
Add bandage image module
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2021-02-05 08:00:44 +01:00 |
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Edmund Miller
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f065476d36
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docs: Add testing documentation
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2021-02-04 16:00:31 -06:00 |
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Michael L Heuer
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50bebac136
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Remove pairwise test
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2021-02-04 15:22:12 -06:00 |
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Michael L Heuer
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061b13bf25
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Fix md5 --> md5sum
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2021-02-04 13:48:56 -06:00 |
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Michael L Heuer
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bbc8c725a2
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Fix lint errors
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2021-02-04 13:45:39 -06:00 |
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Michael L Heuer
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d5f2f5e32d
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Add minimap2 align module
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2021-02-04 13:42:08 -06:00 |
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Michael L Heuer
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37a9f6f456
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Address review comments
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2021-02-04 12:10:54 -06:00 |
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Kevin Menden
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089af956fb
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Merge pull request #148 from nf-core/fix-artifact-path
ci: Fix artifact path
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2021-02-04 15:48:52 +01:00 |
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