Commit graph

35 commits

Author SHA1 Message Date
drpatelh
b0abd14135 Update tests 2020-08-07 09:31:27 +01:00
drpatelh
0466d5249b Update docs 2020-08-07 00:50:49 +01:00
drpatelh
f014e67de6 Remove old outputs 2020-08-07 00:37:13 +01:00
drpatelh
2c7abca088 Move unit tests to deprecated 2020-08-07 00:36:05 +01:00
drpatelh
16d3ad5d06 Adapt script for meta 2020-08-07 00:35:34 +01:00
drpatelh
f315a7b3c4 Hard copy files 2020-08-05 18:38:27 +01:00
drpatelh
5d224740cd Change path 2020-08-05 17:17:58 +01:00
drpatelh
7f5ca56413 Soft-link functions to top-level module dir 2020-08-05 17:03:04 +01:00
drpatelh
3ec4f63fd8 Use correct link to fastqc 2020-08-05 16:28:42 +01:00
drpatelh
c08e6959a5 Reorganise everything 2020-08-05 16:09:25 +01:00
Phil Ewels
3406ed4da0 Merge branch 'master' into fastqc-unit-test 2020-07-17 16:00:59 +02:00
Phil Ewels
f01b3f13a6 Remove debugging statement 2020-07-17 16:00:08 +02:00
Phil Ewels
2d1252c804 FastQC tests - disable hash check 2020-07-17 11:30:28 +02:00
Phil Ewels
dcc4beacb1 Fix FastQC test 2020-07-17 11:26:50 +02:00
Stephen Kelly
846a862513 move md5 function to lib dir and symlink to fastqc test dir, rename md5 function 2020-07-16 09:17:48 -04:00
Phil Ewels
9dfafb4a19
Merge pull request #46 from stevekm/fastqc-unit-test
add FastQC output validation and md5 checksum hash checks
2020-07-16 15:13:44 +02:00
Stephen Kelly
45fbbb538c add FastQC output validation and md5 checksum hash checks 2020-07-16 08:20:37 -04:00
FelixKrueger
e90164dd0b Adding back tool specific input output and index files 2020-07-15 15:46:45 +01:00
drpatelh
532859d437 Update path 2020-07-15 14:07:19 +01:00
Gregor Sturm
a2bcb5c36a Update module according to discussion on Slack 2020-07-15 13:04:49 +02:00
Gregor Sturm
01a926866e
Update software/fastqc/test/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2020-07-15 12:48:21 +02:00
Gregor Sturm
9d7cece077
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2020-07-15 12:48:11 +02:00
Gregor Sturm
5a8803ee2f
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2020-07-15 12:48:03 +02:00
Gregor Sturm
a3db769a93
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2020-07-15 12:47:52 +02:00
Gregor Sturm
180310bf0a
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2020-07-15 12:47:42 +02:00
Gregor Sturm
6ad2b570c2
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2020-07-15 12:47:30 +02:00
Gregor Sturm
53897f4d97
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2020-07-15 12:47:19 +02:00
Gregor Sturm
b00bb83532 Document params 2020-07-15 11:01:15 +02:00
Gregor Sturm
86d6daf9de Implement publish_results parameter 2020-07-15 10:55:52 +02:00
Gregor Sturm
1dc47e7cd3 Make publishDir more flexible 2020-07-15 10:16:48 +02:00
Gregor Sturm
dd34fa5853 Use moduleDir for conda env 2020-07-15 09:48:17 +02:00
Gregor Sturm
f7c42ac4fd Add tests for fastqc module 2020-07-15 09:48:14 +02:00
Gregor Sturm
167067a92e Clean up module file 2020-07-15 09:47:41 +02:00
Phil Ewels
d3f3432451 Update test file imports 2020-07-11 14:33:12 +02:00
Phil Ewels
014fef2e92 Rename tools to software 2020-07-11 14:27:21 +02:00