Edmund Miller
016d8684f3
test(bwa): Refactor to use pytest-workflow
2020-11-24 19:00:11 -06:00
drpatelh
a3f46865ff
Remove Singularity image path
2020-11-12 14:55:16 +00:00
drpatelh
29f9b05433
Update docs
2020-10-15 11:13:54 +01:00
drpatelh
530789ba85
Get tests passing
2020-10-15 10:47:15 +01:00
drpatelh
1d30e2c21a
Update tools not in rnaseq pipeline too
2020-10-14 18:59:25 +01:00
drpatelh
e438d026bd
Unify syntax
2020-09-10 16:45:11 +01:00
drpatelh
473f1b192f
Update functions script
2020-09-10 15:59:26 +01:00
Jeremy1805
789dc4f09a
Changed options.publish_files definition in functions.nf/initOptions
2020-08-20 11:57:10 +01:00
drpatelh
736a0aa43c
Update indents and syntax
2020-08-07 15:05:25 +01:00
drpatelh
cff81ef875
Add test data
2020-08-07 12:57:32 +01:00
drpatelh
7604bd27fc
Add test nextflow.config
2020-08-07 12:56:52 +01:00
drpatelh
f367f9ef69
Add main test script
2020-08-07 12:56:39 +01:00
drpatelh
a6fc702c8b
Update bwa index docs
2020-08-07 12:38:01 +01:00
drpatelh
f315a7b3c4
Hard copy files
2020-08-05 18:38:27 +01:00
drpatelh
da4dcee934
Copy across test data and docs for bwa index
2020-08-05 17:27:28 +01:00
drpatelh
7938a60a02
Add bwa index
2020-08-05 17:15:56 +01:00
drpatelh
c08e6959a5
Reorganise everything
2020-08-05 16:09:25 +01:00
Paolo Di Tommaso
70daf8be30
Minor style improvents
...
This commit provides a minor refactoring with som
Nextflow code style improvments:
- Replaces `.toGiga()` with `.giga`
- Replaces `tag { foo }` with `tag "$foo"`
- Move publishDir before input declarations. Directives should be
before the first input. Tho this is not enforced, it may be in
future versions.
- Replaces input `file` with `path`
- Remove unnecessary parentheses
2020-07-27 12:11:42 +02:00
Phil Ewels
d3f3432451
Update test file imports
2020-07-11 14:33:12 +02:00
Phil Ewels
014fef2e92
Rename tools to software
2020-07-11 14:27:21 +02:00