JoseEspinosa
|
c93e96101a
|
Add untar module
|
2021-02-09 11:50:32 +01:00 |
|
JoseEspinosa
|
20771ae1bc
|
Remove meta from input/output meta.yml
|
2021-02-09 11:02:31 +01:00 |
|
JoseEspinosa
|
b09416a0d0
|
Correcting meta.yml
|
2021-02-09 10:51:57 +01:00 |
|
JoseEspinosa
|
f7f06dd6e8
|
Add gunzip module
|
2021-02-09 10:05:55 +01:00 |
|
Harshil Patel
|
46e5df2cf7
|
Merge pull request #151 from drpatelh/bedtools
Follow up fixes for bedtools modules added in #79
|
2021-02-09 01:54:31 +00:00 |
|
Harshil Patel
|
84cf5ea2ef
|
Merge pull request #153 from JoseEspinosa/bedtools_maskfasta
Add bedtools maskfasta module
|
2021-02-08 23:11:00 +00:00 |
|
JoseEspinosa
|
02d10c25a3
|
Add bedtools maskfasta module
|
2021-02-08 23:41:10 +01:00 |
|
JoseEspinosa
|
f4e322f88d
|
Merging upstream changes
# Conflicts:
# .github/filters.yml
|
2021-02-08 18:09:41 +01:00 |
|
JoseEspinosa
|
fe412797dd
|
Adressing general comments on PR #134
|
2021-02-08 15:11:36 +01:00 |
|
JoseEspinosa
|
5071bf5914
|
Merge remote-tracking branch 'upstream/master' into bcftools_viralrecon
|
2021-02-08 10:45:57 +01:00 |
|
drpatelh
|
c9cfdd31f3
|
Fix barfing linters
|
2021-02-08 00:57:06 +00:00 |
|
drpatelh
|
83a50d8ae0
|
Rename SOFTWARE_TOOL to TOOL_SUBTOOL
|
2021-02-07 23:20:53 +00:00 |
|
drpatelh
|
a34d74188d
|
Really fix Editor Config
|
2021-02-07 21:49:20 +00:00 |
|
drpatelh
|
ef0a984cc0
|
Fix Editor config tests
|
2021-02-07 21:44:45 +00:00 |
|
drpatelh
|
5779b180da
|
Fix bedtools sort module
|
2021-02-07 21:32:43 +00:00 |
|
drpatelh
|
f3b5af4ed5
|
Fix bedtools slip module
|
2021-02-07 21:32:20 +00:00 |
|
drpatelh
|
38964ecfc0
|
Fix bedtools intersect module
|
2021-02-07 21:32:01 +00:00 |
|
drpatelh
|
a37b116186
|
Fix bedtools merge module
|
2021-02-07 21:31:39 +00:00 |
|
drpatelh
|
4564ef0e54
|
Fix bedtools genomecov module
|
2021-02-07 21:31:21 +00:00 |
|
drpatelh
|
a0c08e0c06
|
Fix bedtools complement module
|
2021-02-07 21:31:02 +00:00 |
|
drpatelh
|
a9102c329c
|
Fix bedtools complement module
|
2021-02-07 20:55:12 +00:00 |
|
JoseEspinosa
|
3a40ec5664
|
Adding bcftools_isec taking a path with several vcfs and its tests
|
2021-02-02 10:50:45 +01:00 |
|
JoseEspinosa
|
c25f8f0f6c
|
Fixing tests
|
2021-02-02 09:57:55 +01:00 |
|
JoseEspinosa
|
cee37852cd
|
Merge remote-tracking branch 'upstream/master' into bcftools_viralrecon
|
2021-02-02 09:15:20 +01:00 |
|
JoseEspinosa
|
579de3e038
|
bcftools_tabix generic for any TAB-delimited genome position file
|
2021-02-01 21:59:39 +01:00 |
|
drpatelh
|
f84e5b59ca
|
Rename bowtie_index to bowtie_build
|
2021-02-01 17:53:31 +00:00 |
|
Harshil Patel
|
0a41130276
|
Merge pull request #131 from KevinMenden/fastp-module
Adding fastp module
|
2021-02-01 13:43:35 +00:00 |
|
Harshil Patel
|
e851da8640
|
Merge pull request #130 from KevinMenden/master
Adding a QUAST module
|
2021-02-01 13:17:57 +00:00 |
|
Kevin Menden
|
f6c4e9d9c1
|
Update software/quast/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2021-02-01 14:03:36 +01:00 |
|
Kevin Menden
|
9885da628e
|
Update software/quast/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2021-02-01 14:03:22 +01:00 |
|
Kevin Menden
|
c807c6c438
|
Update software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2021-02-01 14:03:15 +01:00 |
|
Kevin Menden
|
d88bf3bdda
|
Update software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2021-02-01 14:03:06 +01:00 |
|
Kevin Menden
|
c43fe85a0c
|
Update software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2021-02-01 14:02:57 +01:00 |
|
kevinmenden
|
038381de99
|
added fastp module
|
2021-02-01 13:54:08 +01:00 |
|
kevinmenden
|
b5298f94d8
|
refactored quast module
|
2021-02-01 13:13:21 +01:00 |
|
Harshil Patel
|
2c962f34df
|
Merge pull request #110 from luslab/master
Add SEACR module containing a single CALLPEAK process
|
2021-02-01 09:48:15 +00:00 |
|
JoseEspinosa
|
0a8915ae77
|
Adding bcftools_tabix module
|
2021-02-01 10:07:35 +01:00 |
|
JoseEspinosa
|
52b0b8094d
|
Adding bcftools_stats module
|
2021-02-01 10:03:25 +01:00 |
|
JoseEspinosa
|
0423e686a6
|
Adding bcftools_isec module
|
2021-02-01 09:46:24 +01:00 |
|
JoseEspinosa
|
da7598272e
|
Adding bcftools_filter module
|
2021-02-01 09:41:08 +01:00 |
|
JoseEspinosa
|
eb12f4610d
|
Fixing meta ymls
|
2021-02-01 09:28:51 +01:00 |
|
kevinmenden
|
956bf22a58
|
fixed bug; updated meta.yml
|
2021-02-01 07:44:26 +01:00 |
|
JoseEspinosa
|
b6ef06c6cd
|
Add bcftools_consensus module
|
2021-01-31 22:23:26 +01:00 |
|
Harshil Patel
|
eadbea4b83
|
Merge pull request #127 from JoseEspinosa/bowtie2_viralrecon
Bowtie2 viralrecon
|
2021-01-30 13:22:30 +00:00 |
|
Harshil Patel
|
eab633776e
|
Update software/bowtie2/build/meta.yml
|
2021-01-30 13:21:56 +00:00 |
|
JoseEspinosa
|
500481833f
|
Adding bcftools_bgzip module
|
2021-01-30 11:22:25 +01:00 |
|
JoseEspinosa
|
986b72cee9
|
Fix error on previous commit
|
2021-01-30 09:35:25 +01:00 |
|
JoseEspinosa
|
29989035a5
|
Remove author entry from yml (copy-pasted :P)
|
2021-01-30 09:29:53 +01:00 |
|
sruthipsuresh
|
e360617ac6
|
Fixed images, genomecov
|
2021-01-29 23:17:44 -06:00 |
|
sruthipsuresh
|
e3bbbb48fc
|
Fixed slop file
|
2021-01-29 23:17:44 -06:00 |
|