sruthipsuresh
|
521c87f999
|
Updated test.mainnf file.
Added the necessary chrom sizes input and changed test file to directory (as specified in nfcore).
|
2021-01-29 23:17:44 -06:00 |
|
sruthipsuresh
|
fefbdb9893
|
Created test file for checking code.
Still need to add parameters map and chrom sizes path.
|
2021-01-29 23:17:44 -06:00 |
|
Sruthi Suresh
|
185ca19930
|
Added module for slopRefseq, including meta.yml, functions and main
|
2021-01-29 23:17:44 -06:00 |
|
Sruthi Suresh
|
352a48741f
|
updated test file and main.nf file
|
2021-01-29 23:17:44 -06:00 |
|
Sruthi Suresh
|
5a997c5ac6
|
Updated module, need to fix cardinality of tuple
|
2021-01-29 23:17:44 -06:00 |
|
Sruthi Suresh
|
022b0bfe54
|
Updated test directory with input files, corrected main.nf and config. Additionally, main.nf for the process was updated.
|
2021-01-29 23:17:44 -06:00 |
|
sruthipsuresh
|
74f1a62fa4
|
Corrected errors in naming.
|
2021-01-29 23:17:44 -06:00 |
|
sruthipsuresh
|
ec6ebe086f
|
Updated test.mainnf file.
Added the necessary chrom sizes input and changed test file to directory (as specified in nfcore).
|
2021-01-29 23:17:44 -06:00 |
|
sruthipsuresh
|
898c0775c6
|
Main.nf for bedtools module added.
|
2021-01-29 23:17:44 -06:00 |
|
sruthipsuresh
|
a654c0f5fa
|
Created fixbedcoordinates functions.nf file
|
2021-01-29 23:17:44 -06:00 |
|
sruthipsuresh
|
c8f30720a1
|
Created meta file for the fixbedcoordinates module.
|
2021-01-29 23:17:44 -06:00 |
|
sruthipsuresh
|
8d6d48f067
|
Created test file for checking code.
Still need to add parameters map and chrom sizes path.
|
2021-01-29 23:17:44 -06:00 |
|
sruthipsuresh
|
5f705f69e1
|
Fixed version error in bedtools.
|
2021-01-29 23:17:44 -06:00 |
|
sruthipsuresh
|
fe2e27c793
|
Update main.nf
Updated bedtools module with updated container version and upstream/downstream values.
|
2021-01-29 23:17:44 -06:00 |
|
Sruthi Suresh
|
69f9f1cc89
|
Updated with removegenes folder (with meta, main and generic function file).
|
2021-01-29 23:17:44 -06:00 |
|
Sruthi Suresh
|
cfe8a490d8
|
Added module for slopRefseq, including meta.yml, functions and main
|
2021-01-29 23:17:44 -06:00 |
|
drpatelh
|
c08e6959a5
|
Reorganise everything
|
2020-08-05 16:09:25 +01:00 |
|
JoseEspinosa
|
a09e3a633d
|
I forgot to uncomment output
|
2020-07-16 16:38:37 +02:00 |
|
JoseEspinosa
|
d30089f12d
|
Very preliminary implementation of passing optional params to bedtools/intersect modules
|
2020-07-16 16:37:33 +02:00 |
|
JoseEspinosa
|
759dd85c92
|
Removing biocontainer in favor of nf-core container
|
2020-07-16 10:22:09 +02:00 |
|
JoseEspinosa
|
6d8b616975
|
Bedtools sort adapted to the current module standard
|
2020-07-15 18:16:12 +02:00 |
|
JoseEspinosa
|
4d2e375a0d
|
Bedtools merge adapted to the current module standard
|
2020-07-15 18:16:01 +02:00 |
|
JoseEspinosa
|
98c8f44130
|
Bedtools intersect adapted to the current module standard
|
2020-07-15 18:15:49 +02:00 |
|
JoseEspinosa
|
0b123f9e13
|
Bedtools genomecov adapted to the current module standard
|
2020-07-15 18:15:32 +02:00 |
|
JoseEspinosa
|
2cbc988d5f
|
Bedtools complement adapted to the current module standard
|
2020-07-15 18:15:16 +02:00 |
|
JoseEspinosa
|
c485d56972
|
Indentation error in yml
|
2020-07-14 18:00:23 +02:00 |
|
JoseEspinosa
|
562fc74550
|
Indentation error in yml
|
2020-07-14 17:57:42 +02:00 |
|
JoseEspinosa
|
39b9ca205c
|
Correcting path to test data
|
2020-07-14 17:42:03 +02:00 |
|
JoseEspinosa
|
b38135ff6b
|
Moving bedtools/intersectbed to bedtools/intersect
|
2020-07-14 17:40:17 +02:00 |
|
JoseEspinosa
|
c059a485b9
|
Using bedtools{_,-}genomecov instead of genomecov alone
|
2020-07-14 17:31:40 +02:00 |
|
JoseEspinosa
|
71eaa83bf6
|
bedtoools/complementBed changed to bedtools/complement
|
2020-07-14 17:26:45 +02:00 |
|
JoseEspinosa
|
8c3d7aa2d8
|
Standardizing process names to BEDTOOLS_FOO and same with some variables
|
2020-07-14 17:25:32 +02:00 |
|
JoseEspinosa
|
99a8196776
|
Module bedtools-sort added
|
2020-07-14 17:20:12 +02:00 |
|
JoseEspinosa
|
cf9d87c977
|
Module bedtools-merge added
|
2020-07-14 16:49:06 +02:00 |
|
JoseEspinosa
|
708cee9cae
|
Module bedtools-intersectbed added
|
2020-07-14 16:49:05 +02:00 |
|
JoseEspinosa
|
5f80a900e9
|
Changing fasta_sizes by chrom_sizes input path for genomecov
|
2020-07-14 16:47:27 +02:00 |
|
JoseEspinosa
|
f2eb3f68c0
|
Module bedtools-genomecov added
|
2020-07-14 16:47:26 +02:00 |
|
JoseEspinosa
|
f6894c7d3a
|
Module complementbed added
|
2020-07-14 15:50:35 +02:00 |
|