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Author	SHA1	Message	Date
Chris Cheshire	6f35537d40	Merge branch 'master' into expected_error_fix	2022-05-03 12:21:51 +01:00
Chris Cheshire	1baf143607	Merge pull request #1548 from rpetit3/rp3-add-shigatyper ... add module for shigatyper	2022-05-03 12:21:43 +01:00
Chris Cheshire	829183ee84	Merge branch 'master' into rp3-add-shigatyper	2022-05-03 12:16:54 +01:00
Chris Cheshire	b3ee6384e6	Merge pull request #1604 from nf-core/add-slimfastq ... feat: add module for slimfastq	2022-05-03 12:16:41 +01:00
Chris Cheshire	6015478b72	Merge branch 'master' into add-slimfastq	2022-05-03 12:11:19 +01:00
Chris Cheshire	d7fb969a74	Merge branch 'master' into rp3-add-shigatyper	2022-05-03 12:10:23 +01:00
Chris Cheshire	40e6bd9dc1	bowtie2|fix tags error	2022-05-03 12:07:04 +01:00
Chris Cheshire	0f1ee7e50d	bowtie2|test fixes	2022-05-03 12:04:51 +01:00
Chris Cheshire	61f68913fe	Merge branch 'master' into expected_error_fix	2022-05-03 11:49:35 +01:00
Chris Cheshire	768073be63	bowtie2|Added support for large indexes	2022-05-03 11:46:19 +01:00
James A. Fellows Yates	b61cdc7355	Merge pull request #1570 from nvnieuwk/vardict-java ... new_module:vardict-java	2022-05-03 10:26:41 +02:00
nvnieuwk	f85787b19e	Merge branch 'master' into vardict-java	2022-05-03 10:17:04 +02:00
nvnieuwk	8187641280	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:45 +02:00
nvnieuwk	11c6faf433	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:36 +02:00
nvnieuwk	01085b3e09	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:30 +02:00
nvnieuwk	1609dfc96d	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:20 +02:00
nvnieuwk	3cdbdf50fc	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:14 +02:00
nvnieuwk	2dff193b54	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:15:59 +02:00
nvnieuwk	7c89af359c	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:15:51 +02:00
Nicolas Vannieuwkerke	49ba3adbde	Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java	2022-05-03 10:15:33 +02:00
Nicolas Vannieuwkerke	d33253513f	put the version on top of the file	2022-05-03 10:15:30 +02:00
Lucpen	3891eca3c3	Merge pull request #1596 from nf-core/adding_stub_to_modules ... feat added stub to modules gatk4_mergebamalignment_mutect2_revertsam_samtofastq, samtools_view	2022-05-03 10:13:25 +02:00
nvnieuwk	278d41b6bf	Merge branch 'master' into vardict-java	2022-05-03 09:59:05 +02:00
Ramprasad Neethiraj	6f787aea71	Merge branch 'master' into adding_stub_to_modules	2022-05-03 09:43:16 +02:00
Lauri Mesilaakso	218400b632	Merge pull request #1600 from Genomic-Medicine-Linkoping/add_handling_of_alternative_fn_suffix_for_metaphlan3 ... Add additional handling of fq.gz file name suffix	2022-05-03 09:50:09 +03:00
Lauri Mesilaakso	77054795fb	Merge branch 'master' into add_handling_of_alternative_fn_suffix_for_metaphlan3	2022-05-03 09:38:51 +03:00
Nicolas Vannieuwkerke	71c5d21374	ran prettier	2022-05-03 08:34:12 +02:00
Nicolas Vannieuwkerke	9127f92ddd	Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java	2022-05-03 08:29:50 +02:00
Nicolas Vannieuwkerke	9a10e5beb5	Added the missing inputs in meta.yml + correct notation	2022-05-03 08:29:46 +02:00
Matthias De Smet	1687bfcb85	Merge branch 'master' into add-slimfastq	2022-05-03 08:22:49 +02:00
Matthias De Smet	a67c06af81	Merge branch 'master' into vardict-java	2022-05-03 08:22:19 +02:00
Nicolas Vannieuwkerke	d8782d7976	Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java	2022-05-03 08:20:13 +02:00
Nicolas Vannieuwkerke	b8a59c2b17	Fixed version annotation	2022-05-03 08:20:10 +02:00
Sateesh Peri	88a9a55c80	Merge pull request #1574 from jvhagey/srst2/srst2 ... new module: srst2/srst2	2022-05-02 20:21:23 -04:00
Jill V. Hagey, PhD	23cfb5dd42	Update test.yml	2022-05-02 18:38:48 -04:00
Jill V. Hagey, PhD	db9681029c	Update test.yml	2022-05-02 18:27:01 -04:00
Jill V. Hagey, PhD	7b0d6f96fd	Update test.yml	2022-05-02 18:20:54 -04:00
Jill V. Hagey, PhD	e5d7c80bb5	Update test.yml	2022-05-02 18:13:14 -04:00
Moritz E. Beber	16aa3915e3	feat: add module for slimfastq	2022-05-02 23:16:59 +02:00
Ramprasad Neethiraj	3194729f82	Merge branch 'master' into adding_stub_to_modules	2022-05-02 18:31:55 +02:00
Jill V. Hagey, PhD	99a8711997	Update tests/modules/srst2/srst2/test.yml ... Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com>	2022-05-02 12:26:56 -04:00
Sateesh Peri	c56b371713	Merge branch 'master' into srst2/srst2	2022-05-02 12:13:11 -04:00
jvhagey	cd45dc1550	linting test.yml	2022-05-02 11:38:39 -04:00
Jasmin F	f70cfbe1d7	Merge pull request #1581 from jasmezz/antismash_db_output ... Antismash db output	2022-05-02 17:37:01 +02:00
jvhagey	24dc2d2113	added tests	2022-05-02 11:30:19 -04:00
Jasmin F	235944f797	Merge branch 'master' into antismash_db_output	2022-05-02 17:11:51 +02:00
Jasmin F	8db0b754c0	Fix commented-out command	2022-05-02 16:56:39 +02:00
jasmezz	6a9f2077cf	Fix unbound variable crash	2022-05-02 16:41:59 +02:00
Lucpen	50cc136a78	Update tests/modules/gatk4/mutect2/main.nf ... fix spelling mistake Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>	2022-05-02 15:14:05 +02:00
Lucpen	62c6123ec4	fix gatk4_mutect2 test by changing main.nf	2022-05-02 15:11:57 +02:00