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12 commits

Author SHA1 Message Date
James A. Fellows Yates
54ff289487
Update mOTUs to remove now unused channel (#2075) 
* Update main.nf

* Update meta.yml

* Re-add logos as not staged in a way that works with MultiQC config files

* Update main.nf

* Remove now unnecessary input channel

* Remove unused channel from tests
 2022-09-16 10:23:21 +02:00
James A. Fellows Yates
8372df6fb2
Update MOTUS/MERGE (#2068) 
* Update main.nf

* Update meta.yml

* Re-add logos as not staged in a way that works with MultiQC config files

* Add meta to mOTUs merge

* Put tests back to use downloaded db

* Apply suggestions from code review

* Fix test text string

* md5sum -> contains

* Update nextflow.config
 2022-09-15 19:45:43 +02:00
James A. Fellows Yates
b6ed584443
Update MOTUS/PROFILE module to output log file (#1871) 
* Add saving of stderr output as a log file as it contains summary statistics

* Apply suggestions from code review
 2022-07-13 11:26:27 +02:00
James A. Fellows Yates
b02e648c22
Add MOTUS/MERGE (#1734) 
* Add motus/merge module, missing test yml

* Fix prefix

* Fix polymersase

* Update test meta.yml

* Try new version system

* Typo fix

* Clairfy docs for the version file

* Switch to directory auto detection

* Now with the change and not just meta

* Remove now unneeded input parameter from test

* Fix input type check

* Try adding db requirement to fix docker issue

* Update modules/motus/merge/main.nf

* Fix input

* Apply suggestions from code review

* Fix md5sums

* Replace debugging db location with actual

* Fix contains due to further varialbility

* Indenting
 2022-07-07 09:47:41 +02:00
James A. Fellows Yates
2eebab4f35
Update tests/modules/motus/profile/test.yml 2022-05-12 20:55:54 +01:00
James A. Fellows Yates
8dd711aba2
Update tests/modules/motus/profile/main.nf 2022-05-12 20:08:37 +01:00
JIANHONG OU
9b50036e9b add test_bam and -m parameter for motus_profile 2022-05-06 08:56:42 -04:00
JIANHONG OU
26d5b4da72
Update tests/modules/motus/profile/main.nf 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:19:54 -04:00
JIANHONG OU
fb5c5d310a update motus module. 2022-05-05 13:38:46 -04:00
JIANHONG OU
c8f2c44e22 Merge remote-tracking branch 'origin' into motus_profile 2022-05-05 09:41:13 -04:00
JIANHONG OU
0f24e4dcff add input database and intermediate bam file. 2022-05-02 08:37:12 -04:00
JIANHONG OU
98d318c0e0 init 2022-04-24 07:55:17 -04:00