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2414 commits 30 branches 0 tags 142 MiB
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770 commits

Author SHA1 Message Date
James A. Fellows Yates
8a83ad0518
Merge branch 'master' into motus_profile 2022-05-09 08:16:16 +02:00
JIANHONG OU
b2542ee079 remove the mgc in metadata for motus_profile. 2022-05-08 06:21:26 -04:00
Harshil Patel
2676f8eef4
Merge branch 'master' into fix-prefetch 2022-05-06 19:33:44 +01:00
Matthias De Smet
0752b82c9f
Merge branch 'master' into update/snapaligner 2022-05-06 18:57:37 +02:00
Moritz E. Beber
ea41c753c0 fix: remove retry label 
Call gets retried by bash script
 2022-05-06 17:28:56 +02:00
Moritz E. Beber
dd1c66783a refactor: use a template to add retrying 2022-05-06 17:26:41 +02:00
Moritz E. Beber
ed09978222 chore: update build number 2022-05-06 17:26:41 +02:00
JIANHONG OU
9b50036e9b add test_bam and -m parameter for motus_profile 2022-05-06 08:56:42 -04:00
JIANHONG OU
c301a406dd
Merge branch 'nf-core:master' into motus_profile 2022-05-06 08:33:43 -04:00
JIANHONG OU
3499314b96
Update modules/motus/profile/meta.yml 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:19:47 -04:00
JIANHONG OU
4df57b03bd
Update modules/motus/profile/meta.yml 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:11:58 -04:00
JIANHONG OU
6b2f16a0f4
Update modules/motus/profile/meta.yml 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:11:39 -04:00
JIANHONG OU
baeb2bd1c1
Update modules/motus/profile/main.nf 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:11:29 -04:00
JIANHONG OU
4497eb1734
Update modules/motus/profile/main.nf 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:11:22 -04:00
Matthias De Smet
3930ba227b merge snapaligner modes into one 2022-05-06 14:10:44 +02:00
Mahesh Binzer-Panchal
9fa6b6c1fc Update meta.yml 2022-05-06 11:56:43 +00:00
Mahesh Binzer-Panchal
a9f23bb477
Merge branch 'master' into busco 2022-05-06 13:49:01 +02:00
Mahesh Binzer-Panchal
35c5828f43 Add --auto-lineage option and remove single_end 
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
 2022-05-06 11:48:21 +00:00
Jose Espinosa-Carrasco
035655e35d
Merge branch 'master' into modules/md5sum 2022-05-06 12:34:14 +02:00
Ramprasad Neethiraj
e639b1e455
Merge branch 'master' into feat/update_cnvpytor 2022-05-06 12:03:12 +02:00
Matthias De Smet
bd1b80f36e fix software definitions 2022-05-06 11:07:05 +02:00
Ramprasad Neethiraj
1ccea5ff4d remove prefix def in callcnvs 2022-05-06 10:56:58 +02:00
Matthias De Smet
1c7205d683 fixed container definitions 2022-05-06 10:44:51 +02:00
Matthias De Smet
77d825e043 fix copy paste errors 2022-05-06 10:39:13 +02:00
Matthias De Smet
09e729ad41 added sha256sum 2022-05-06 10:28:14 +02:00
Matthias De Smet
853b623969 new module: md5sum 2022-05-06 09:20:40 +02:00
Ramprasad Neethiraj
313d76e005 update svdb version 2022-05-06 00:18:16 +02:00
Ramprasad Neethiraj
af73544010 update meta 2022-05-06 00:13:49 +02:00
Ramprasad Neethiraj
db56d80060 Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor 2022-05-06 00:10:28 +02:00
Ramprasad Neethiraj
e4e4f8090c combine multiple pytor 2022-05-05 23:59:12 +02:00
JIANHONG OU
e391c65510 fix the version issue for motus_profile. 2022-05-05 15:35:31 -04:00
JIANHONG OU
b8efa2ae7c
Merge branch 'master' into motus_profile 2022-05-05 13:41:54 -04:00
JIANHONG OU
fb5c5d310a update motus module. 2022-05-05 13:38:46 -04:00
Sateesh Peri
faf45edc5e
Merge branch 'master' into busco 2022-05-05 12:48:39 -04:00
Ramprasad Neethiraj
db2acba71b
Merge branch 'master' into feat/update_cnvpytor 2022-05-05 17:31:10 +02:00
Ramprasad Neethiraj
c183d7b397 Merge branch 'feat/update_cnvpytor' of github.com:ramprasadn/modules into feat/update_cnvpytor 2022-05-05 17:28:59 +02:00
Ramprasad Neethiraj
ea1f5daf44 polish python script in view 2022-05-05 17:28:49 +02:00
Harshil Patel
1289626cc9
Update modules/busco/main.nf 2022-05-05 16:09:45 +01:00
Mahesh Binzer-Panchal
2542ae1823
Update modules/busco/main.nf 
Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com>
 2022-05-05 16:33:32 +02:00
Sateesh Peri
3414d3aba3
Merge branch 'master' into busco 2022-05-05 10:08:55 -04:00
JIANHONG OU
c8f2c44e22 Merge remote-tracking branch 'origin' into motus_profile 2022-05-05 09:41:13 -04:00
JIANHONG OU
a8bc386ea3
Merge branch 'master' into motus_downloaddb 2022-05-05 09:36:25 -04:00
JIANHONG OU
566c11dacc
Merge branch 'master' into motus_downloaddb 2022-05-05 08:28:10 -04:00
Francesco L
97f318eea6
Merge branch 'master' into firstbranch 2022-05-05 14:25:00 +02:00
Carpanzano
a700a9c15e Merge branch 'firstbranch' of github.com:carpanz/modules into firstbranch 2022-05-05 13:52:45 +02:00
Carpanzano
9083d3bb3d integrating suggestions from PR comments, including recovery of tests for kronadb and more detailed explanation of input database in yml file 2022-05-05 13:51:41 +02:00
MaxUlysse
40dd662fd2 update ensemblvep and snpeff modules 2022-05-05 12:57:14 +02:00
James A. Fellows Yates
e60c6f9bfd
Merge branch 'master' into firstbranch 2022-05-05 10:57:27 +02:00
Carpanzano
204dfba2d8 fixing ktupdatetaxonomy/meta.yml as suggested in PR 2022-05-05 10:51:22 +02:00
Mahesh Binzer-Panchal
865ad3447a Update meta.yml output files 2022-05-05 08:23:54 +00:00