Mahesh Binzer-Panchal
|
58ea709f7f
|
Merge branch 'master' into busco
|
2022-05-05 09:34:14 +02:00 |
|
James A. Fellows Yates
|
6393a085c5
|
Apply suggestions from code review
|
2022-05-05 08:23:51 +02:00 |
|
JIANHONG OU
|
29ee72c693
|
update meta.yml and remove the cleanup step.
|
2022-05-04 15:37:12 -04:00 |
|
JIANHONG OU
|
e9c82a5f48
|
Update modules/motus/downloaddb/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-04 15:29:06 -04:00 |
|
James A. Fellows Yates
|
35b5ba673f
|
Merge branch 'master' into motus_downloaddb
|
2022-05-04 20:58:08 +02:00 |
|
James A. Fellows Yates
|
ec5bada3fc
|
Update modules/motus/downloaddb/meta.yml
|
2022-05-04 20:55:16 +02:00 |
|
Lauri Mesilaakso
|
e757966566
|
Merge branch 'master' into add_compression_to_bam2fq
|
2022-05-04 18:41:36 +03:00 |
|
Carpanzano
|
a6086f549d
|
recovered process name
|
2022-05-04 17:28:24 +02:00 |
|
Carpanzano
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8b1711d8a1
|
recovering old module name
|
2022-05-04 16:38:10 +02:00 |
|
Simone Carpanzano
|
162f8edf54
|
Merge branch 'master' into firstbranch
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2022-05-04 16:35:25 +02:00 |
|
Carpanzano
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6b8ca501ed
|
fixing suggestions from PR
|
2022-05-04 16:34:52 +02:00 |
|
Nicolas Vannieuwkerke
|
f875aec46b
|
Split the module into two parts
|
2022-05-04 15:29:48 +02:00 |
|
Mahesh Binzer-Panchal
|
5986a3efbf
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Merge branch 'master' into busco
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2022-05-04 15:09:54 +02:00 |
|
Nicolas Vannieuwkerke
|
505ab03803
|
fixed a description
|
2022-05-04 14:14:53 +02:00 |
|
Nicolas Vannieuwkerke
|
177a7e49f2
|
Fixed a linting issue
|
2022-05-04 14:06:42 +02:00 |
|
Nicolas Vannieuwkerke
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000b8ee2e0
|
Merge branch 'new-module-hap.py' of github.com:nvnieuwk/modules into new-module-hap.py
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2022-05-04 14:05:23 +02:00 |
|
Nicolas Vannieuwkerke
|
065a5d6a7f
|
Fixed a linting issue
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2022-05-04 14:05:21 +02:00 |
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nvnieuwk
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c9808cb97f
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Merge branch 'master' into new-module-hap.py
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2022-05-04 14:01:02 +02:00 |
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Nicolas Vannieuwkerke
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37338ecee3
|
Finished the module
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2022-05-04 14:00:02 +02:00 |
|
Ramprasad Neethiraj
|
6541e151bc
|
Merge branch 'master' into feat/update_cnvpytor
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2022-05-04 13:54:46 +02:00 |
|
Mahesh Binzer-Panchal
|
73a8df9522
|
Fix no genes found test and update test.yml
|
2022-05-04 11:52:42 +00:00 |
|
Nicolas Vannieuwkerke
|
c517ce9b4d
|
Added the module and some simple testing
|
2022-05-04 13:42:12 +02:00 |
|
Mahesh Binzer-Panchal
|
8df20218bf
|
Add more tests and capture summaries
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
|
2022-05-04 09:22:43 +00:00 |
|
Mahesh Binzer-Panchal
|
3bb0711b06
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Merge branch 'master' into busco
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2022-05-04 09:15:46 +02:00 |
|
Lauri Mesilaakso
|
530b5ac661
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-04 09:53:46 +03:00 |
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Chris Cheshire
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79e64cdd1f
|
Merge branch 'master' into expected_error_fix
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2022-05-03 22:21:28 +01:00 |
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JIANHONG OU
|
dc59ad0bf5
|
fix the version issue.
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2022-05-03 12:27:39 -04:00 |
|
Jill V. Hagey, PhD
|
f02cd618b8
|
Update meta.yml
|
2022-05-03 10:09:19 -04:00 |
|
Lauri Mesilaakso
|
12f79c2101
|
Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 17:03:02 +03:00 |
|
Mahesh Binzer-Panchal
|
1c54c0b1ae
|
Apply suggestions from code review
Co-authored-by: Matthieu Muffato <cortexspam-github@yahoo.fr>
|
2022-05-03 16:02:11 +02:00 |
|
Matthieu Muffato
|
6351ec745e
|
Update contributor list
|
2022-05-03 14:56:27 +01:00 |
|
Matthieu Muffato
|
4be754b008
|
It's a file, not a directory
|
2022-05-03 14:53:17 +01:00 |
|
Mahesh Binzer-Panchal
|
636abad8f1
|
Merge branch 'master' into busco
|
2022-05-03 15:38:25 +02:00 |
|
Nicolas Vannieuwkerke
|
96d4a31cc1
|
Moved the BED file to the main tuple
|
2022-05-03 15:31:05 +02:00 |
|
Mahesh Binzer-Panchal
|
5f4781adaa
|
Merge branch 'master' into busco
|
2022-05-03 15:27:10 +02:00 |
|
Mahesh Binzer-Panchal
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57db28386e
|
Support batch fasta analysis
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2022-05-03 13:26:49 +00:00 |
|
ljmesi
|
034352dbbf
|
Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq
|
2022-05-03 15:18:12 +02:00 |
|
ljmesi
|
5510ea39fe
|
Test --no-name to solve inconsistent checksums
|
2022-05-03 15:18:09 +02:00 |
|
Ramprasad Neethiraj
|
26311aba2a
|
fix minor errors
|
2022-05-03 15:04:37 +02:00 |
|
Ramprasad Neethiraj
|
be085c0173
|
Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor
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2022-05-03 14:55:42 +02:00 |
|
Ramprasad Neethiraj
|
19cfb4e951
|
update meta files
|
2022-05-03 14:53:56 +02:00 |
|
Ramprasad Neethiraj
|
3efa931bf6
|
view
|
2022-05-03 14:26:46 +02:00 |
|
Ramprasad Neethiraj
|
829c15c98b
|
partition
|
2022-05-03 14:26:34 +02:00 |
|
Ramprasad Neethiraj
|
7cc47f6ba6
|
importrd
|
2022-05-03 14:25:20 +02:00 |
|
Ramprasad Neethiraj
|
07e026054a
|
histogram
|
2022-05-03 14:24:54 +02:00 |
|
Ramprasad Neethiraj
|
2990dc8357
|
callcnv module
|
2022-05-03 14:20:05 +02:00 |
|
Lauri Mesilaakso
|
a65e76e3dd
|
Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 14:30:54 +03:00 |
|
Chris Cheshire
|
6f35537d40
|
Merge branch 'master' into expected_error_fix
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2022-05-03 12:21:51 +01:00 |
|
Chris Cheshire
|
829183ee84
|
Merge branch 'master' into rp3-add-shigatyper
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2022-05-03 12:16:54 +01:00 |
|
Chris Cheshire
|
6015478b72
|
Merge branch 'master' into add-slimfastq
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2022-05-03 12:11:19 +01:00 |
|
Chris Cheshire
|
d7fb969a74
|
Merge branch 'master' into rp3-add-shigatyper
|
2022-05-03 12:10:23 +01:00 |
|
Chris Cheshire
|
61f68913fe
|
Merge branch 'master' into expected_error_fix
|
2022-05-03 11:49:35 +01:00 |
|
Chris Cheshire
|
768073be63
|
bowtie2|Added support for large indexes
|
2022-05-03 11:46:19 +01:00 |
|
Mahesh Binzer-Panchal
|
012f085378
|
Prettier
|
2022-05-03 09:19:39 +00:00 |
|
Mahesh Binzer-Panchal
|
9eff38ff94
|
Update meta.yml
|
2022-05-03 09:15:45 +00:00 |
|
Mahesh Binzer-Panchal
|
ddbe6e8f40
|
Merge branch 'master' into busco
|
2022-05-03 10:48:03 +02:00 |
|
Mahesh Binzer-Panchal
|
9a72548ee1
|
Update busco module
|
2022-05-03 08:42:56 +00:00 |
|
Lauri Mesilaakso
|
6367c6a1ad
|
Merge branch 'master' into add_compression_to_bam2fq
|
2022-05-03 11:41:25 +03:00 |
|
nvnieuwk
|
f85787b19e
|
Merge branch 'master' into vardict-java
|
2022-05-03 10:17:04 +02:00 |
|
nvnieuwk
|
8187641280
|
Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-03 10:16:45 +02:00 |
|
nvnieuwk
|
11c6faf433
|
Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-03 10:16:36 +02:00 |
|
nvnieuwk
|
01085b3e09
|
Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-03 10:16:30 +02:00 |
|
nvnieuwk
|
1609dfc96d
|
Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-03 10:16:20 +02:00 |
|
nvnieuwk
|
3cdbdf50fc
|
Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-03 10:16:14 +02:00 |
|
nvnieuwk
|
2dff193b54
|
Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-03 10:15:59 +02:00 |
|
nvnieuwk
|
7c89af359c
|
Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-03 10:15:51 +02:00 |
|
Nicolas Vannieuwkerke
|
49ba3adbde
|
Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
|
2022-05-03 10:15:33 +02:00 |
|
Nicolas Vannieuwkerke
|
d33253513f
|
put the version on top of the file
|
2022-05-03 10:15:30 +02:00 |
|
Lauri Mesilaakso
|
773e6f8e93
|
Merge branch 'master' into add_compression_to_bam2fq
|
2022-05-03 11:13:55 +03:00 |
|
nvnieuwk
|
278d41b6bf
|
Merge branch 'master' into vardict-java
|
2022-05-03 09:59:05 +02:00 |
|
ljmesi
|
5503903457
|
Add compression for output fastq file
|
2022-05-03 09:46:04 +02:00 |
|
Ramprasad Neethiraj
|
6f787aea71
|
Merge branch 'master' into adding_stub_to_modules
|
2022-05-03 09:43:16 +02:00 |
|
Lauri Mesilaakso
|
77054795fb
|
Merge branch 'master' into add_handling_of_alternative_fn_suffix_for_metaphlan3
|
2022-05-03 09:38:51 +03:00 |
|
Nicolas Vannieuwkerke
|
71c5d21374
|
ran prettier
|
2022-05-03 08:34:12 +02:00 |
|
Nicolas Vannieuwkerke
|
9127f92ddd
|
Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
|
2022-05-03 08:29:50 +02:00 |
|
Nicolas Vannieuwkerke
|
9a10e5beb5
|
Added the missing inputs in meta.yml + correct notation
|
2022-05-03 08:29:46 +02:00 |
|
Matthias De Smet
|
1687bfcb85
|
Merge branch 'master' into add-slimfastq
|
2022-05-03 08:22:49 +02:00 |
|
Matthias De Smet
|
a67c06af81
|
Merge branch 'master' into vardict-java
|
2022-05-03 08:22:19 +02:00 |
|
Nicolas Vannieuwkerke
|
d8782d7976
|
Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
|
2022-05-03 08:20:13 +02:00 |
|
Nicolas Vannieuwkerke
|
b8a59c2b17
|
Fixed version annotation
|
2022-05-03 08:20:10 +02:00 |
|
Moritz E. Beber
|
16aa3915e3
|
feat: add module for slimfastq
|
2022-05-02 23:16:59 +02:00 |
|
Ramprasad Neethiraj
|
3194729f82
|
Merge branch 'master' into adding_stub_to_modules
|
2022-05-02 18:31:55 +02:00 |
|
JIANHONG OU
|
5735f515f8
|
fix a typo in version export.
|
2022-05-02 12:25:48 -04:00 |
|
Sateesh Peri
|
c56b371713
|
Merge branch 'master' into srst2/srst2
|
2022-05-02 12:13:11 -04:00 |
|
Carpanzano
|
c07ae8c483
|
fixed lint in ktimporttaxonomy
|
2022-05-02 17:47:45 +02:00 |
|
Simone Carpanzano
|
3d9c8a6bb1
|
Merge branch 'master' into firstbranch
|
2022-05-02 17:43:33 +02:00 |
|
jvhagey
|
24dc2d2113
|
added tests
|
2022-05-02 11:30:19 -04:00 |
|
Jasmin F
|
235944f797
|
Merge branch 'master' into antismash_db_output
|
2022-05-02 17:11:51 +02:00 |
|
Jasmin F
|
8db0b754c0
|
Fix commented-out command
|
2022-05-02 16:56:39 +02:00 |
|
jasmezz
|
6a9f2077cf
|
Fix unbound variable crash
|
2022-05-02 16:41:59 +02:00 |
|
Lucpen
|
62c6123ec4
|
fix gatk4_mutect2 test by changing main.nf
|
2022-05-02 15:11:57 +02:00 |
|
JIANHONG OU
|
250d64dfde
|
fix the typo of motus_downloadb.
|
2022-05-02 08:52:54 -04:00 |
|
JIANHONG OU
|
b14f30936e
|
Merge branch 'nf-core:master' into motus_downloaddb
|
2022-05-02 08:42:09 -04:00 |
|
JIANHONG OU
|
31dd31079d
|
update teh versions.yml
|
2022-05-02 08:41:41 -04:00 |
|
jasmezz
|
0fc352188b
|
Fix conda antismash path
|
2022-05-02 14:40:35 +02:00 |
|
JIANHONG OU
|
0f24e4dcff
|
add input database and intermediate bam file.
|
2022-05-02 08:37:12 -04:00 |
|
Jasmin F
|
5cd517e759
|
Apply suggestions from code review
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-02 14:31:40 +02:00 |
|
Lucpen
|
dfabf960dc
|
Merge branch 'master' into adding_stub_to_modules
|
2022-05-02 14:20:03 +02:00 |
|
ljmesi
|
ed4dd1a928
|
Add additional handling of fq.gz file name suffix
|
2022-05-02 14:16:12 +02:00 |
|
Lucpen
|
f231291e77
|
fix gatk4_reversam test
|
2022-05-02 12:58:12 +02:00 |
|