MaxUlysse
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9c98194d3c
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chores: remove fasta file from bwamem2 mem process
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2021-02-12 16:00:59 +01:00 |
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MaxUlysse
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0afddf6ca4
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fix: CI is working
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2021-02-12 15:24:09 +01:00 |
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MaxUlysse
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2f18750964
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chores: update filters.yml
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2021-02-12 13:53:49 +01:00 |
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Maxime Garcia
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c1ff201518
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-12 13:24:10 +01:00 |
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MaxUlysse
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6b34ddf239
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chores: bwa-mem2 -> bwamem2
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2021-02-12 13:08:44 +01:00 |
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MaxUlysse
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a910d1a608
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chores: add bwa-mem2 index + mem
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2021-02-12 13:00:02 +01:00 |
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Maxime Garcia
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27be87ac72
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Merge pull request #135 from drpatelh/bwa
Update indices syntax for BWA index and mem modules
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2021-02-12 12:45:38 +01:00 |
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Jose Espinosa-Carrasco
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1e771ac8a0
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Merge pull request #164 from drpatelh/fixes
Add missing build ids and rename *.txt channels
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2021-02-10 14:19:00 +01:00 |
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drpatelh
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b9afca2b05
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Underscore not .
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2021-02-10 12:53:17 +00:00 |
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drpatelh
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d2508e3c03
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Amend prefix for bcftools stats
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2021-02-10 12:51:47 +00:00 |
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Harshil Patel
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9069ed5921
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Merge pull request #165 from drpatelh/pangolin
Bump Pangolin version and minor amendments
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2021-02-10 11:22:47 +00:00 |
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drpatelh
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e63279e6a2
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Pin pangoLearn version
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2021-02-10 10:28:27 +00:00 |
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drpatelh
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1d00a4a11c
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Update md5sum
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2021-02-09 23:31:39 +00:00 |
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drpatelh
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79d730f2c3
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Change output name
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2021-02-09 23:27:08 +00:00 |
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drpatelh
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7f629bca45
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OCDness
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2021-02-09 23:26:55 +00:00 |
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drpatelh
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b03846600d
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Tidy up
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2021-02-09 23:26:45 +00:00 |
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drpatelh
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6795fe04b8
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Rename output channel
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2021-02-09 23:26:18 +00:00 |
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drpatelh
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2b9129b3f9
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Change txt channel output
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2021-02-09 23:09:22 +00:00 |
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drpatelh
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d50d070c06
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Change txt channel output
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2021-02-09 23:09:18 +00:00 |
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drpatelh
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0b33b6d081
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Add missing build ids
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2021-02-09 23:03:13 +00:00 |
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Harshil Patel
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6765db81be
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Merge pull request #163 from JoseEspinosa/fix_conda_build
Add conda build id
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2021-02-09 22:47:15 +00:00 |
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JoseEspinosa
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e8dc199dc8
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Adding conda build to blast modules
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2021-02-09 23:04:12 +01:00 |
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JoseEspinosa
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2fa14f2ec8
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Adding conda build to bcftools modules
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2021-02-09 23:00:19 +01:00 |
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Harshil Patel
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6319fb242e
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Merge pull request #161 from JoseEspinosa/bedtools_getfasta
Add bedtools getfasta module
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2021-02-09 21:42:16 +00:00 |
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Harshil Patel
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28866f3dc7
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Update tests/software/bedtools/maskfasta/main.nf
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2021-02-09 21:36:38 +00:00 |
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Harshil Patel
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3f431014a4
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Update software/bedtools/getfasta/main.nf
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2021-02-09 21:34:40 +00:00 |
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Harshil Patel
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aaa088dba8
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Update tests/software/bedtools/getfasta/main.nf
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2021-02-09 21:34:29 +00:00 |
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JoseEspinosa
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68b85d9191
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Merge remote-tracking branch 'upstream/master' into bedtools_getfasta
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2021-02-09 18:23:24 +01:00 |
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Jose Espinosa-Carrasco
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1baca83f00
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Merge pull request #160 from JoseEspinosa/blast_blastn
Add blast blastn module
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2021-02-09 18:22:23 +01:00 |
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JoseEspinosa
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1e9b88b33c
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Fixing trailing slashes in .github/filters.yml
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2021-02-09 18:16:16 +01:00 |
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JoseEspinosa
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e118bc049a
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Add bedtools getfasta module
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2021-02-09 17:56:51 +01:00 |
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JoseEspinosa
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7536b386a5
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Correct channel declaration on bedtools_maskfasta
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2021-02-09 17:56:01 +01:00 |
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JoseEspinosa
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9a11e90892
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Fixing tests
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2021-02-09 17:07:23 +01:00 |
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JoseEspinosa
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12ae7b0bff
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Adding blast blastn module
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2021-02-09 16:58:36 +01:00 |
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Harshil Patel
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25db9bc648
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Merge pull request #159 from JoseEspinosa/blast_makeblastdb
Add blast makeblastdb module
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2021-02-09 15:36:25 +00:00 |
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JoseEspinosa
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d0f09e26b6
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Adding blast makeblastdb module to filters.yml
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2021-02-09 15:47:53 +01:00 |
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JoseEspinosa
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c23b355b35
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Add blast makeblastdb module
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2021-02-09 15:44:34 +01:00 |
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Harshil Patel
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678f104097
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Update README.md
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2021-02-09 13:27:30 +00:00 |
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Harshil Patel
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4113e44141
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Merge pull request #158 from JoseEspinosa/untar
Add untar module
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2021-02-09 11:28:57 +00:00 |
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JoseEspinosa
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c93e96101a
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Add untar module
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2021-02-09 11:50:32 +01:00 |
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Harshil Patel
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889fced870
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Merge pull request #157 from JoseEspinosa/gunzip
Add gunzip module
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2021-02-09 10:40:46 +00:00 |
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Harshil Patel
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3ec8a2af02
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Merge pull request #154 from nf-core/doc-fixs
docs: Update README with minor edits
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2021-02-09 10:39:17 +00:00 |
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JoseEspinosa
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20771ae1bc
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Remove meta from input/output meta.yml
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2021-02-09 11:02:31 +01:00 |
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JoseEspinosa
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b09416a0d0
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Correcting meta.yml
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2021-02-09 10:51:57 +01:00 |
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JoseEspinosa
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9b65961828
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Fix file output path on test
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2021-02-09 10:22:50 +01:00 |
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JoseEspinosa
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f7f06dd6e8
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Add gunzip module
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2021-02-09 10:05:55 +01:00 |
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Edmund Miller
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4c30f2943e
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docs: Use one tag in all of the examples
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-08 20:13:11 -06:00 |
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Harshil Patel
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46e5df2cf7
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Merge pull request #151 from drpatelh/bedtools
Follow up fixes for bedtools modules added in #79
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2021-02-09 01:54:31 +00:00 |
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Edmund Miller
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9637a8189a
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docs: Update README with minor edits
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2021-02-08 19:46:42 -06:00 |
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Harshil Patel
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84cf5ea2ef
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Merge pull request #153 from JoseEspinosa/bedtools_maskfasta
Add bedtools maskfasta module
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2021-02-08 23:11:00 +00:00 |
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