millironx/nf-core_modules
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26 commits

Author SHA1 Message Date
Abhinav Sharma
b43c1f3937 Refactor the multiqc test code 2020-12-01 12:19:52 +05:30
Paolo Cozzi
835ac48565 Fixing MULTIQC module and adding tests (#1) 
* fix multiqc process

* fix multiqc tests

* move multiqc test input data into tests/data/fastqc/ folder

Move input tests data into tests/data/fastqc/ and linking those files into software/multiqc/test/input/ as stated from the project documentation

* add multiqc github workflow

* remove unused file

* generalize multiqc input data

User must collect all desidered files in a channel (as described in https://seqera.io/training/#_multiqc_report

* update meta information
 2020-12-01 12:03:37 +05:30
Edmund Miller
83539fcdf2
test(fastqc): restructure under software/fastqc 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-11-24 15:30:51 -06:00
Edmund Miller
b96f2d6a5e test(config): One config to rule them all 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-11-24 20:26:04 +00:00
Edmund Miller
2e56022e31 test(fastqc): Remove input symlinks 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-11-24 20:26:04 +00:00
Edmund Miller
1fd97e8804 test(fastqc): Fix md5sums 2020-11-24 20:26:04 +00:00
Edmund Miller
ba681c6f27 refactor(pytest-workflow): Move fastqc tests to tests/ 2020-11-24 20:26:04 +00:00
Edmund Miller
c264c66a49
test(fastqc): Use -entry to speed up tests 
`--wt, --workflow-threads` is now an option and can be used to run tests
simultaneously.
 2020-11-16 13:41:59 -06:00
Edmund Miller
29937fe198
test(fastqc): Add expected files and md5sums 
The md5 sums change for the zip files every run so it's difficult to hit
a moving target.
 2020-11-16 10:20:29 -06:00
Edmund Miller
07017f401e
test(fastqc): Add initial pytest-workflow 2020-11-16 09:35:01 -06:00
drpatelh
29f1585068 Remove test functions folder 2020-08-07 14:05:55 +01:00
drpatelh
6333786d62 Add test BAM files 2020-08-07 14:04:39 +01:00
drpatelh
953256f967 Reformat paired-end fastqs 2020-08-07 13:46:23 +01:00
drpatelh
0cbefde4b0 Add index test data for BWA 2020-08-07 13:25:02 +01:00
Harshil Patel
95a91032ce
Merge pull request #42 from JoseEspinosa/bedtools_dev 
Add modules complement, genomecov, intersect, merge, sort for bedtools
 2020-08-05 15:45:17 +01:00
FelixKrueger
9402a2efbe Still fixing linting 2020-07-16 09:06:59 +01:00
FelixKrueger
c6f73f9d56 Trying to trigger CI tests 2020-07-16 09:01:29 +01:00
JoseEspinosa
1273c31294 Adding files for bedtools testing 2020-07-15 18:13:51 +02:00
FelixKrueger
684005f2cb Fixing markdown lint 2 2020-07-15 16:00:21 +01:00
FelixKrueger
4f8b7a90aa Trying to fix markdown linting 2020-07-15 15:59:17 +01:00
FelixKrueger
02156d6b0d Removing old subsampled SRR files 2020-07-15 15:48:09 +01:00
FelixKrueger
1c84a234ec Adding back in all input files we had before 2020-07-15 15:12:04 +01:00
Gregor Sturm
f7c42ac4fd Add tests for fastqc module 2020-07-15 09:48:14 +02:00
Gregor Sturm
4ee6ddc7ab Update README 2020-07-14 10:55:38 +02:00
Phil Ewels
d3f3432451 Update test file imports 2020-07-11 14:33:12 +02:00
Phil Ewels
cffb8b63ab Move to new tests/ folder 2020-07-11 14:28:26 +02:00