jtangrot
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1c99ffd876
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Add vserach usearch_global
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2022-05-30 08:50:27 +02:00 |
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Harshil Patel
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b86d792055
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Merge pull request #1703 from drpatelh/star
Bump container version for STAR to 2.7.10a
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2022-05-27 12:29:59 +01:00 |
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Harshil Patel
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ad578cafcc
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Fix tests
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2022-05-27 12:14:10 +01:00 |
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Harshil Patel
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fb6c7bca3d
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Bump container version for STAR to 2.7.10a
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2022-05-27 11:35:04 +01:00 |
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jtangrot
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05e4e2cdde
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Add idcutoff as input
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2022-05-26 20:16:45 +02:00 |
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Sateesh Peri
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ead3679829
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Merge branch 'master' into rp3-add-snippy
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2022-05-26 03:04:19 -04:00 |
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Harshil Patel
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f89b76afa4
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Merge pull request #1701 from matthdsm/update/mosdepth
Mosdepth: add all remaining outputs
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2022-05-25 19:46:37 +01:00 |
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Harshil Patel
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72a31b76eb
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Update main.nf
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2022-05-25 19:42:15 +01:00 |
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Harshil Patel
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241a1de035
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Update main.nf
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2022-05-25 19:38:12 +01:00 |
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Matthias De Smet
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bc7002b0c9
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Merge branch 'master' into update/mosdepth
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2022-05-25 19:20:45 +02:00 |
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Matthias De Smet
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72ff2732e3
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add all remaining outputs to mosdepth
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2022-05-25 19:19:39 +02:00 |
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Mahesh Binzer-Panchal
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038fced07e
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Merge pull request #1698 from mahesh-panchal/mash_screen_patch
Patch mash screen
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2022-05-25 17:00:01 +02:00 |
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Mahesh Binzer-Panchal
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3d532405a5
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Merge branch 'master' into mash_screen_patch
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2022-05-25 16:51:42 +02:00 |
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SusiJo
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b34e5ea6bf
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rm unnecessary spark_user
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2022-05-25 16:38:48 +02:00 |
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SusiJo
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1400f2e683
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fixed tests - mixed chr21 + chr22
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2022-05-25 16:38:30 +02:00 |
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SusiJo
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dd6d838cd7
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override userEmulation
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2022-05-25 16:37:44 +02:00 |
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Robert A. Petit III
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c50e097cd1
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Merge pull request #1696 from jvhagey/gamma-update
adding upzip to gamma/gamma
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2022-05-25 10:06:03 -04:00 |
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Mahesh Binzer-Panchal
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c452f56289
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Patch mash screen
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2022-05-25 12:29:14 +00:00 |
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jasmezz
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77b5986463
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Create ampir module
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2022-05-25 13:27:10 +02:00 |
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Jill V. Hagey, PhD
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b1dd1d8a52
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Merge branch 'nf-core:master' into gamma-update
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2022-05-24 19:28:06 -04:00 |
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jvhagey
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127665d27b
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fixed test.yml
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2022-05-24 19:27:09 -04:00 |
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jvhagey
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bb999395aa
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fixed pytest_modules.yml
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2022-05-24 19:19:38 -04:00 |
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Mahesh Binzer-Panchal
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de74c0a83b
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Merge pull request #1620 from mahesh-panchal/kat_hist
Add module kat hist
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2022-05-25 00:23:38 +02:00 |
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Mahesh Binzer-Panchal
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3d51956b88
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Merge branch 'master' into kat_hist
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2022-05-24 23:10:13 +02:00 |
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Ramprasad Neethiraj
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00db06eb9e
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Merge pull request #1685 from genomic-medicine-sweden/rhocall
add bcftools/roh
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2022-05-24 22:39:32 +02:00 |
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jvhagey
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b8aaea7429
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updating paths in test.yml
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2022-05-24 16:27:00 -04:00 |
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jvhagey
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f1fc7fc38e
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adding upzip
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2022-05-24 15:15:07 -04:00 |
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Ramprasad Neethiraj
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fe90615f57
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Merge branch 'rhocall' of github.com:genomic-medicine-sweden/modules into rhocall
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2022-05-24 16:17:59 +02:00 |
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Ramprasad Neethiraj
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b0dba3ee75
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update description
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2022-05-24 16:17:15 +02:00 |
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Ramprasad Neethiraj
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c91947f8a1
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Merge branch 'master' into rhocall
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2022-05-24 16:07:55 +02:00 |
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Mahesh Binzer-Panchal
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9a5d6a815b
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Merge branch 'master' into kat_hist
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2022-05-24 15:46:12 +02:00 |
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SusiJo
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60793adea2
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Merge pull request #1694 from SusiJo/cnvkit/reference
Add prefix to cnvkit/reference
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2022-05-24 15:11:06 +02:00 |
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SusiJo
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3077e4d34c
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Merge branch 'master' into cnvkit/reference
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2022-05-24 15:00:29 +02:00 |
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SusiJo
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8208140d21
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missing meta.id changed
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2022-05-24 14:59:52 +02:00 |
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Harshil Patel
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2c0b0df088
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Merge pull request #1693 from matthdsm/update/mosdepth
mosdepth: cram compatiblility
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2022-05-24 13:52:18 +01:00 |
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Matthias De Smet
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8381a5e5dd
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add window test
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2022-05-24 14:43:40 +02:00 |
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SusiJo
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6b425735b9
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Merge remote-tracking branch 'origin/master' into cnvkit/reference
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2022-05-24 14:20:55 +02:00 |
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SusiJo
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749edce069
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add prefix
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2022-05-24 14:20:19 +02:00 |
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Mahesh Binzer-Panchal
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c8ffecfe86
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Merge branch 'master' into kat_hist
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2022-05-24 13:57:45 +02:00 |
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Matthias De Smet
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c51c047b2e
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Merge branch 'master' into update/mosdepth
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2022-05-24 13:50:22 +02:00 |
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Harshil Patel
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f9aa1e0bdb
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Merge pull request #1692 from SusiJo/cnvkit/reference
Changed tag of module
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2022-05-24 12:49:15 +01:00 |
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Matthias De Smet
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a2a8e09762
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Update modules/mosdepth/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-24 13:45:52 +02:00 |
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Matthias De Smet
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5bc2d419a9
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fix fail test
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2022-05-24 13:23:00 +02:00 |
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Thiseas C. Lamnidis
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6d04395c3c
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Merge branch 'master' into sexdeterrmine
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2022-05-24 13:17:37 +02:00 |
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Mahesh Binzer-Panchal
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afb5f226e6
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Merge branch 'master' into kat_hist
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2022-05-24 13:06:31 +02:00 |
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Matthias De Smet
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858cbe80c6
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add must fail test
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2022-05-24 12:43:49 +02:00 |
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Matthias De Smet
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7e777c6626
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add error is is provided twice
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2022-05-24 12:25:31 +02:00 |
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Matthias De Smet
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b5850fd471
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add stub
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2022-05-24 12:16:03 +02:00 |
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Harshil Patel
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393f23274d
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Merge branch 'master' into cnvkit/reference
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2022-05-24 11:14:50 +01:00 |
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Harshil Patel
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29a4f112be
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Update main.nf
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2022-05-24 11:14:32 +01:00 |
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