Mahesh Binzer-Panchal
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cd32c7f744
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Merge branch 'master' into kat_hist
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2022-05-10 17:03:00 +02:00 |
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Mahesh Binzer-Panchal
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b875cfb744
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Merge branch 'master' into kat_hist
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2022-05-10 14:36:18 +02:00 |
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Praveen Raj S
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237971cd15
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Merge branch 'master' into master
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2022-05-10 14:35:41 +02:00 |
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Nicolas Vannieuwkerke
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fa7c947c35
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Adjusted meta
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2022-05-10 13:33:37 +02:00 |
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Nicolas Vannieuwkerke
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b7134855e4
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Small update on the output channels
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2022-05-10 12:34:52 +02:00 |
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Nicolas Vannieuwkerke
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c18391aa49
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Updated meta.yml
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2022-05-10 12:26:13 +02:00 |
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nvnieuwk
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2eb77bd64e
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Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-10 12:22:56 +02:00 |
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nvnieuwk
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29f2d3c284
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Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-10 12:22:49 +02:00 |
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Nicolas Vannieuwkerke
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ef4857ec54
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Updated meta.yml
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2022-05-10 12:20:01 +02:00 |
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Nicolas Vannieuwkerke
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f3d5584ab0
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Linting
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2022-05-10 12:08:23 +02:00 |
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Nicolas Vannieuwkerke
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5db26f9f35
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Linting
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2022-05-10 12:07:11 +02:00 |
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Nicolas Vannieuwkerke
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3a064b0a99
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Split the output to different channels
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2022-05-10 12:05:42 +02:00 |
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Nicolas Vannieuwkerke
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e5d091ad4b
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Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval
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2022-05-10 09:35:44 +02:00 |
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Nicolas Vannieuwkerke
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c69d5cc23e
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Added evaluation-regions and adjusted the output to now contain all output (and not only the summary)
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2022-05-10 09:35:42 +02:00 |
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nvnieuwk
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95103fbd79
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-10 09:06:34 +02:00 |
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Praveen Raj S
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459a2d1759
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Merge branch 'master' into master
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2022-05-09 22:16:59 +02:00 |
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Mahesh Binzer-Panchal
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705ad7c3a1
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Merge branch 'master' into meryl_unionsum
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2022-05-09 16:20:01 +02:00 |
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nvnieuwk
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aceb5220cf
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 16:18:00 +02:00 |
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Mahesh Binzer-Panchal
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83a266ea70
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Merge branch 'master' into meryl_unionsum
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2022-05-09 16:16:08 +02:00 |
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FriederikeHanssen
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adc4ff868c
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Merge branch 'master' into samtools_convert
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2022-05-09 16:15:24 +02:00 |
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Rike
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da79396f06
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rename aligned to alignment
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2022-05-09 16:07:49 +02:00 |
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Rike
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5bd456e5e8
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rename file_type to output extension
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2022-05-09 16:06:22 +02:00 |
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Rike
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1de1c2253e
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Combine output after code review
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2022-05-09 16:04:58 +02:00 |
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Nicolas Vannieuwkerke
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bd7e1414a4
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Fixed meta.yml
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2022-05-09 15:55:48 +02:00 |
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nvnieuwk
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4b8bd9ebf9
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 15:51:31 +02:00 |
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Nicolas Vannieuwkerke
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1b63d03f8e
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adjusted the bed variable name
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2022-05-09 15:51:19 +02:00 |
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Nicolas Vannieuwkerke
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f6262b4a10
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fixed some issues
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2022-05-09 15:47:07 +02:00 |
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Rike
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24d5e7feed
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Code review suggestions
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2022-05-09 15:42:55 +02:00 |
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Mahesh Binzer-Panchal
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8d86988632
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Merge branch 'master' into meryl/histogram
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2022-05-09 15:39:32 +02:00 |
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Rike
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ef5f145342
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Generalize Bam2Cram do either conversion
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2022-05-09 15:22:54 +02:00 |
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Mahesh Binzer-Panchal
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57fee2b3d6
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Add description pattern
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2022-05-09 12:56:22 +00:00 |
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Annick Renevey
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bf91f9dd9b
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update arriba module
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2022-05-09 14:55:59 +02:00 |
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Mahesh Binzer-Panchal
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6621768550
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Update pytest outputs
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2022-05-09 12:54:31 +00:00 |
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Mahesh Binzer-Panchal
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ce97c87b5d
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Merge branch 'master' into meryl_unionsum
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2022-05-09 13:51:55 +02:00 |
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Mahesh Binzer-Panchal
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7a5d5f5766
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Merge branch 'master' into kat_hist
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2022-05-09 13:18:18 +02:00 |
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Mahesh Binzer-Panchal
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a43bc940d6
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Add suggestions from code review
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2022-05-09 11:15:14 +00:00 |
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Mahesh Binzer-Panchal
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129f57ccd9
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Add meryl histogram
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2022-05-09 08:50:28 +00:00 |
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Mahesh Binzer-Panchal
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ad4f8389cb
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Add meryl unionsum
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2022-05-09 08:33:21 +00:00 |
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Mahesh Binzer-Panchal
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32b0fdc9d9
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Merge branch 'master' into meryl_count
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2022-05-09 10:05:28 +02:00 |
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Mahesh Binzer-Panchal
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4591ea2205
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atomize
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2022-05-09 07:58:58 +00:00 |
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Matthias De Smet
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2b91985aa0
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 09:43:48 +02:00 |
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Nicolas Vannieuwkerke
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d18af7358a
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Moved untarring the genome sdf folder to the test itself
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2022-05-09 09:20:42 +02:00 |
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nvnieuwk
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6fd9246aef
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Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-09 08:07:33 +02:00 |
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Harshil Patel
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2676f8eef4
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Merge branch 'master' into fix-prefetch
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2022-05-06 19:33:44 +01:00 |
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Matthias De Smet
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0752b82c9f
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Merge branch 'master' into update/snapaligner
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2022-05-06 18:57:37 +02:00 |
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Moritz E. Beber
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ea41c753c0
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fix: remove retry label
Call gets retried by bash script
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2022-05-06 17:28:56 +02:00 |
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Moritz E. Beber
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dd1c66783a
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refactor: use a template to add retrying
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2022-05-06 17:26:41 +02:00 |
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Moritz E. Beber
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ed09978222
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chore: update build number
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2022-05-06 17:26:41 +02:00 |
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Mahesh Binzer-Panchal
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67481c6d54
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Start Meryl count
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2022-05-06 15:04:04 +00:00 |
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Mahesh Binzer-Panchal
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1e55ad987f
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Merge branch 'master' into kat_hist
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2022-05-06 16:35:51 +02:00 |
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