Nicolas Vannieuwkerke
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eb8688d2b8
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Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval
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2022-05-06 16:21:35 +02:00 |
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Nicolas Vannieuwkerke
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e271410017
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Removed some whitespaces
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2022-05-06 16:21:32 +02:00 |
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nvnieuwk
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5153e10840
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-06 16:19:17 +02:00 |
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Nicolas Vannieuwkerke
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84b354ab6a
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Added the rtgtools/vcfeval module
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2022-05-06 14:23:40 +02:00 |
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Matthias De Smet
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3930ba227b
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merge snapaligner modes into one
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2022-05-06 14:10:44 +02:00 |
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Mahesh Binzer-Panchal
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9fa6b6c1fc
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Update meta.yml
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2022-05-06 11:56:43 +00:00 |
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Mahesh Binzer-Panchal
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a9f23bb477
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Merge branch 'master' into busco
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2022-05-06 13:49:01 +02:00 |
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Mahesh Binzer-Panchal
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35c5828f43
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Add --auto-lineage option and remove single_end
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
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2022-05-06 11:48:21 +00:00 |
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Jose Espinosa-Carrasco
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035655e35d
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Merge branch 'master' into modules/md5sum
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2022-05-06 12:34:14 +02:00 |
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Ramprasad Neethiraj
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e639b1e455
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Merge branch 'master' into feat/update_cnvpytor
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2022-05-06 12:03:12 +02:00 |
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Matthias De Smet
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bd1b80f36e
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fix software definitions
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2022-05-06 11:07:05 +02:00 |
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Ramprasad Neethiraj
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1ccea5ff4d
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remove prefix def in callcnvs
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2022-05-06 10:56:58 +02:00 |
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Matthias De Smet
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1c7205d683
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fixed container definitions
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2022-05-06 10:44:51 +02:00 |
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Matthias De Smet
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77d825e043
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fix copy paste errors
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2022-05-06 10:39:13 +02:00 |
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Matthias De Smet
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09e729ad41
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added sha256sum
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2022-05-06 10:28:14 +02:00 |
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Mahesh Binzer-Panchal
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d83281eac9
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Merge branch 'master' into kat_hist
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2022-05-06 10:02:44 +02:00 |
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Mahesh Binzer-Panchal
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9194fb845e
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Add module kat hist
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2022-05-06 07:54:10 +00:00 |
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Matthias De Smet
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853b623969
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new module: md5sum
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2022-05-06 09:20:40 +02:00 |
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Ramprasad Neethiraj
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313d76e005
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update svdb version
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2022-05-06 00:18:16 +02:00 |
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Ramprasad Neethiraj
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af73544010
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update meta
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2022-05-06 00:13:49 +02:00 |
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Ramprasad Neethiraj
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db56d80060
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Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor
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2022-05-06 00:10:28 +02:00 |
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Ramprasad Neethiraj
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e4e4f8090c
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combine multiple pytor
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2022-05-05 23:59:12 +02:00 |
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Sateesh Peri
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faf45edc5e
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Merge branch 'master' into busco
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2022-05-05 12:48:39 -04:00 |
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Ramprasad Neethiraj
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db2acba71b
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Merge branch 'master' into feat/update_cnvpytor
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2022-05-05 17:31:10 +02:00 |
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Ramprasad Neethiraj
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c183d7b397
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Merge branch 'feat/update_cnvpytor' of github.com:ramprasadn/modules into feat/update_cnvpytor
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2022-05-05 17:28:59 +02:00 |
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Ramprasad Neethiraj
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ea1f5daf44
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polish python script in view
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2022-05-05 17:28:49 +02:00 |
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Harshil Patel
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1289626cc9
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Update modules/busco/main.nf
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2022-05-05 16:09:45 +01:00 |
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Mahesh Binzer-Panchal
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2542ae1823
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Update modules/busco/main.nf
Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com>
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2022-05-05 16:33:32 +02:00 |
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Sateesh Peri
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3414d3aba3
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Merge branch 'master' into busco
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2022-05-05 10:08:55 -04:00 |
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JIANHONG OU
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a8bc386ea3
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Merge branch 'master' into motus_downloaddb
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2022-05-05 09:36:25 -04:00 |
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JIANHONG OU
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566c11dacc
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Merge branch 'master' into motus_downloaddb
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2022-05-05 08:28:10 -04:00 |
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Francesco L
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97f318eea6
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Merge branch 'master' into firstbranch
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2022-05-05 14:25:00 +02:00 |
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Carpanzano
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a700a9c15e
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Merge branch 'firstbranch' of github.com:carpanz/modules into firstbranch
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2022-05-05 13:52:45 +02:00 |
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Carpanzano
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9083d3bb3d
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integrating suggestions from PR comments, including recovery of tests for kronadb and more detailed explanation of input database in yml file
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2022-05-05 13:51:41 +02:00 |
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MaxUlysse
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40dd662fd2
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update ensemblvep and snpeff modules
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2022-05-05 12:57:14 +02:00 |
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James A. Fellows Yates
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e60c6f9bfd
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Merge branch 'master' into firstbranch
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2022-05-05 10:57:27 +02:00 |
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Carpanzano
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204dfba2d8
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fixing ktupdatetaxonomy/meta.yml as suggested in PR
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2022-05-05 10:51:22 +02:00 |
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Mahesh Binzer-Panchal
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865ad3447a
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Update meta.yml output files
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2022-05-05 08:23:54 +00:00 |
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Mahesh Binzer-Panchal
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58ea709f7f
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Merge branch 'master' into busco
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2022-05-05 09:34:14 +02:00 |
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James A. Fellows Yates
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6393a085c5
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Apply suggestions from code review
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2022-05-05 08:23:51 +02:00 |
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JIANHONG OU
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29ee72c693
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update meta.yml and remove the cleanup step.
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2022-05-04 15:37:12 -04:00 |
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JIANHONG OU
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e9c82a5f48
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Update modules/motus/downloaddb/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-04 15:29:06 -04:00 |
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James A. Fellows Yates
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35b5ba673f
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Merge branch 'master' into motus_downloaddb
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2022-05-04 20:58:08 +02:00 |
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James A. Fellows Yates
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ec5bada3fc
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Update modules/motus/downloaddb/meta.yml
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2022-05-04 20:55:16 +02:00 |
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Lauri Mesilaakso
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e757966566
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-04 18:41:36 +03:00 |
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Carpanzano
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a6086f549d
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recovered process name
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2022-05-04 17:28:24 +02:00 |
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Nicolas Vannieuwkerke
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3c07602443
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Added the version.yml
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2022-05-04 16:51:09 +02:00 |
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Carpanzano
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8b1711d8a1
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recovering old module name
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2022-05-04 16:38:10 +02:00 |
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Simone Carpanzano
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162f8edf54
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Merge branch 'master' into firstbranch
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2022-05-04 16:35:25 +02:00 |
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Carpanzano
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6b8ca501ed
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fixing suggestions from PR
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2022-05-04 16:34:52 +02:00 |
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Nicolas Vannieuwkerke
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f875aec46b
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Split the module into two parts
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2022-05-04 15:29:48 +02:00 |
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Mahesh Binzer-Panchal
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5986a3efbf
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Merge branch 'master' into busco
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2022-05-04 15:09:54 +02:00 |
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Nicolas Vannieuwkerke
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505ab03803
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fixed a description
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2022-05-04 14:14:53 +02:00 |
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Nicolas Vannieuwkerke
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177a7e49f2
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Fixed a linting issue
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2022-05-04 14:06:42 +02:00 |
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Nicolas Vannieuwkerke
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000b8ee2e0
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Merge branch 'new-module-hap.py' of github.com:nvnieuwk/modules into new-module-hap.py
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2022-05-04 14:05:23 +02:00 |
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Nicolas Vannieuwkerke
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065a5d6a7f
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Fixed a linting issue
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2022-05-04 14:05:21 +02:00 |
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nvnieuwk
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c9808cb97f
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Merge branch 'master' into new-module-hap.py
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2022-05-04 14:01:02 +02:00 |
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Nicolas Vannieuwkerke
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37338ecee3
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Finished the module
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2022-05-04 14:00:02 +02:00 |
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Ramprasad Neethiraj
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6541e151bc
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Merge branch 'master' into feat/update_cnvpytor
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2022-05-04 13:54:46 +02:00 |
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Mahesh Binzer-Panchal
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73a8df9522
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Fix no genes found test and update test.yml
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2022-05-04 11:52:42 +00:00 |
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Nicolas Vannieuwkerke
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c517ce9b4d
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Added the module and some simple testing
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2022-05-04 13:42:12 +02:00 |
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Mahesh Binzer-Panchal
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8df20218bf
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Add more tests and capture summaries
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
|
2022-05-04 09:22:43 +00:00 |
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Mahesh Binzer-Panchal
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3bb0711b06
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Merge branch 'master' into busco
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2022-05-04 09:15:46 +02:00 |
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Lauri Mesilaakso
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530b5ac661
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-04 09:53:46 +03:00 |
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Chris Cheshire
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79e64cdd1f
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Merge branch 'master' into expected_error_fix
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2022-05-03 22:21:28 +01:00 |
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JIANHONG OU
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dc59ad0bf5
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fix the version issue.
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2022-05-03 12:27:39 -04:00 |
|
Jill V. Hagey, PhD
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f02cd618b8
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Update meta.yml
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2022-05-03 10:09:19 -04:00 |
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Lauri Mesilaakso
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12f79c2101
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 17:03:02 +03:00 |
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Mahesh Binzer-Panchal
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1c54c0b1ae
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Apply suggestions from code review
Co-authored-by: Matthieu Muffato <cortexspam-github@yahoo.fr>
|
2022-05-03 16:02:11 +02:00 |
|
Matthieu Muffato
|
6351ec745e
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Update contributor list
|
2022-05-03 14:56:27 +01:00 |
|
Matthieu Muffato
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4be754b008
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It's a file, not a directory
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2022-05-03 14:53:17 +01:00 |
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Mahesh Binzer-Panchal
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636abad8f1
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Merge branch 'master' into busco
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2022-05-03 15:38:25 +02:00 |
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Nicolas Vannieuwkerke
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96d4a31cc1
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Moved the BED file to the main tuple
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2022-05-03 15:31:05 +02:00 |
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Mahesh Binzer-Panchal
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5f4781adaa
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Merge branch 'master' into busco
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2022-05-03 15:27:10 +02:00 |
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Mahesh Binzer-Panchal
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57db28386e
|
Support batch fasta analysis
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2022-05-03 13:26:49 +00:00 |
|
ljmesi
|
034352dbbf
|
Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq
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2022-05-03 15:18:12 +02:00 |
|
ljmesi
|
5510ea39fe
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Test --no-name to solve inconsistent checksums
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2022-05-03 15:18:09 +02:00 |
|
Ramprasad Neethiraj
|
26311aba2a
|
fix minor errors
|
2022-05-03 15:04:37 +02:00 |
|
Ramprasad Neethiraj
|
be085c0173
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Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor
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2022-05-03 14:55:42 +02:00 |
|
Ramprasad Neethiraj
|
19cfb4e951
|
update meta files
|
2022-05-03 14:53:56 +02:00 |
|
Ramprasad Neethiraj
|
3efa931bf6
|
view
|
2022-05-03 14:26:46 +02:00 |
|
Ramprasad Neethiraj
|
829c15c98b
|
partition
|
2022-05-03 14:26:34 +02:00 |
|
Ramprasad Neethiraj
|
7cc47f6ba6
|
importrd
|
2022-05-03 14:25:20 +02:00 |
|
Ramprasad Neethiraj
|
07e026054a
|
histogram
|
2022-05-03 14:24:54 +02:00 |
|
Ramprasad Neethiraj
|
2990dc8357
|
callcnv module
|
2022-05-03 14:20:05 +02:00 |
|
Lauri Mesilaakso
|
a65e76e3dd
|
Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 14:30:54 +03:00 |
|
Chris Cheshire
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6f35537d40
|
Merge branch 'master' into expected_error_fix
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2022-05-03 12:21:51 +01:00 |
|
Chris Cheshire
|
829183ee84
|
Merge branch 'master' into rp3-add-shigatyper
|
2022-05-03 12:16:54 +01:00 |
|
Chris Cheshire
|
6015478b72
|
Merge branch 'master' into add-slimfastq
|
2022-05-03 12:11:19 +01:00 |
|
Chris Cheshire
|
d7fb969a74
|
Merge branch 'master' into rp3-add-shigatyper
|
2022-05-03 12:10:23 +01:00 |
|
Chris Cheshire
|
61f68913fe
|
Merge branch 'master' into expected_error_fix
|
2022-05-03 11:49:35 +01:00 |
|
Chris Cheshire
|
768073be63
|
bowtie2|Added support for large indexes
|
2022-05-03 11:46:19 +01:00 |
|
Mahesh Binzer-Panchal
|
012f085378
|
Prettier
|
2022-05-03 09:19:39 +00:00 |
|
Mahesh Binzer-Panchal
|
9eff38ff94
|
Update meta.yml
|
2022-05-03 09:15:45 +00:00 |
|
Mahesh Binzer-Panchal
|
ddbe6e8f40
|
Merge branch 'master' into busco
|
2022-05-03 10:48:03 +02:00 |
|
Mahesh Binzer-Panchal
|
9a72548ee1
|
Update busco module
|
2022-05-03 08:42:56 +00:00 |
|
Lauri Mesilaakso
|
6367c6a1ad
|
Merge branch 'master' into add_compression_to_bam2fq
|
2022-05-03 11:41:25 +03:00 |
|
nvnieuwk
|
f85787b19e
|
Merge branch 'master' into vardict-java
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2022-05-03 10:17:04 +02:00 |
|
nvnieuwk
|
8187641280
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-03 10:16:45 +02:00 |
|
nvnieuwk
|
11c6faf433
|
Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-03 10:16:36 +02:00 |
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