Edmund Miller
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d83ab84dc2
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ci: Add job to run all tests
Less granular but this will do for large changes
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2021-04-07 18:26:57 -05:00 |
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Edmund Miller
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d9d2037044
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ci: Fix max module math
256 max jobs / 2 nxf versions / 3 profiles
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2021-04-07 18:26:08 -05:00 |
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Edmund Miller
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64f4151632
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ci: Cause changes to fail if the modules > 256
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2021-04-07 18:26:08 -05:00 |
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Edmund Miller
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c6f676e86f
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ci: Check that number of jobs is less than 256
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2021-04-07 18:26:05 -05:00 |
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Edmund Miller
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6e4b23a1ca
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ci: Upload work directory on failure (#388)
Closes #374
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2021-03-25 09:34:19 +00:00 |
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Edmund Miller
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1fc4aa260d
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ci: Add 21.03.0 version to matrix (#317)
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2021-03-22 22:57:59 +00:00 |
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Harshil Patel
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9b99b33401
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Rename .github/filters.yml -> tests/config/pytest_software.yml (#271)
* Rename pytest filters.yml
* Change filters.yml name
* Update resoures for ivar trim
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2021-03-15 12:51:30 +00:00 |
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Gregor Sturm
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38349417ad
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Update .github/workflows/pytest-workflow.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-23 14:14:29 +01:00 |
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Gregor Sturm
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94bdc62123
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Only use one thread for pytest-workflow
This avoids a race condition on the conda cache.
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2021-02-23 14:06:52 +01:00 |
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drpatelh
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418bd64e80
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Test module with Conda
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2021-02-07 21:33:42 +00:00 |
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Edmund Miller
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05c09429a3
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ci: Fix artifact path
Had to change it for singularity
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2021-02-04 08:45:34 -06:00 |
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Edmund Miller
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6fe7b48b5b
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Revert "Run alllll the testsgit add .github/workflows/pytest-workflow.yml"
This reverts commit ffc218e51b .
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2021-02-03 20:08:11 -06:00 |
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drpatelh
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ffc218e51b
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Run alllll the testsgit add .github/workflows/pytest-workflow.yml
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2021-02-03 20:03:45 -06:00 |
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drpatelh
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0c88ff7458
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Upgrade Singularity and change TMPDIR for pytest output
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2021-02-03 20:03:43 -06:00 |
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drpatelh
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3968c18fd7
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Only run Docker tests
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2021-02-03 14:04:58 +00:00 |
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drpatelh
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9e44b0f4f2
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Add conda clean step to action
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2021-02-03 12:57:55 +00:00 |
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drpatelh
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49fecaa4f0
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Switch channel order
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2021-02-03 12:07:39 +00:00 |
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drpatelh
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d783e2d535
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Only test Docker and Conda
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2021-02-03 09:02:12 +00:00 |
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Edmund Miller
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54bb0ae7a1
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ci: Name logs
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2021-02-02 17:51:20 -06:00 |
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Edmund Miller
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42b8962320
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ci: Add bioconda channels
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2021-02-02 17:13:35 -06:00 |
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Edmund Miller
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0813e61c01
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ci: Kick off all container types
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2021-02-02 17:08:10 -06:00 |
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Edmund Miller
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725de25ce4
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Revert "ci: Only test docker for now"
This reverts commit c63ba06777 .
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2021-02-02 17:03:29 -06:00 |
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Edmund Miller
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c63ba06777
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ci: Only test docker for now
I can't access the artifacts.
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2021-02-02 16:49:03 -06:00 |
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Edmund Miller
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bb3196ddeb
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ci: Update name to use matrix
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2021-02-02 16:49:03 -06:00 |
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Edmund Miller
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dcfd1089e5
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ci: Add --keep-workflow-wd-on-fail
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2021-02-02 16:49:03 -06:00 |
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Edmund Miller
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983b024010
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ci: Use ubuntu-20.04 for singularity
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2021-02-02 16:49:02 -06:00 |
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Edmund Miller
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8cd6e41df9
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ci: Change singularity version 3.6.4 => 3.5.3
Per @grst having issues after 3.6
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2021-02-02 16:49:02 -06:00 |
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Edmund Miller
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bf2e027fdf
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ci: Remove conda to kickoff CI
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2021-02-02 16:48:58 -06:00 |
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Edmund Miller
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1e9aad430d
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ci: Remove ${{}} for style points
It's not necessary in if statements
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2021-02-02 15:40:30 -06:00 |
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Edmund Miller
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654c6225f0
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ci: Setup multiple profiles for testing
Added conda and singularity
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2021-02-02 15:38:51 -06:00 |
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Edmund Miller
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341fa43ae3
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ci: Add PROFILE ahead of pytest run
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2021-02-02 13:07:58 -06:00 |
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Edmund Miller
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ce2a5b32f5
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refactor: Move away from composite-action
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2021-02-02 12:21:36 -06:00 |
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Edmund Miller
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6da00a8a1b
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ci: Put python setup before cache
34cf8a3e0f
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2021-01-24 11:38:29 -06:00 |
|
Edmund Miller
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c7262e27d8
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ci: Cache nextflow
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2021-01-24 11:35:24 -06:00 |
|
Edmund Miller
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73b572eede
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ci: Cache pip
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2021-01-24 11:25:13 -06:00 |
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Edmund Miller
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b048bf33e0
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ci: Check to see if it's an example array
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2021-01-24 11:14:48 -06:00 |
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Edmund Miller
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7a89902657
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ci: Fix check for no checks
https://github.community/t/needs-job-outputs-issue/149156
https://github.community/t/jobs-being-skipped-while-using-both-needs-and-if-unclear-why/18480
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2021-01-24 10:34:40 -06:00 |
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Edmund Miller
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b008afe2e6
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ci(#119): Upload logs on failure
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2021-01-24 10:33:45 -06:00 |
|
Edmund Miller
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13539e1c1a
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ci: Change name of pytest step
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2021-01-24 10:33:45 -06:00 |
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Edmund Miller
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860a49d456
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ci: Need to wrap matrix's in []
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2021-01-24 10:33:45 -06:00 |
|
Edmund Miller
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0f1016e4a3
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ci: Remove any filter
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2021-01-24 10:33:45 -06:00 |
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Edmund Miller
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9577f5dd64
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ci: Reference output rather than a step
The step wasn't there
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2021-01-24 10:33:45 -06:00 |
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Edmund Miller
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939b1490b7
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ci: Check if there's a change to anything
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2021-01-24 10:33:45 -06:00 |
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Edmund Miller
|
3aaacdde09
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ci: Checkout code before looking for changes
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2021-01-24 10:33:44 -06:00 |
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Edmund Miller
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f4316480c5
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ci: Use paths-filter to make one CI test
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2021-01-24 10:33:44 -06:00 |
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Edmund Miller
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474a6fad64
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ci: Add python setup
Cause apparently you can use an action inside of an action. Yet.
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2021-01-24 10:33:44 -06:00 |
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Edmund Miller
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d00bd5f6b1
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ci: v0.1 => master
Living life on the edge
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2021-01-24 10:33:44 -06:00 |
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Edmund Miller
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95270092b0
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ci: Add universal CI Test
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2021-01-24 10:33:44 -06:00 |
|