47 commits

Author	SHA1	Message	Date
Edmund Miller	d9d2037044	ci: Fix max module math ... 256 max jobs / 2 nxf versions / 3 profiles	2021-04-07 18:26:08 -05:00
Edmund Miller	64f4151632	ci: Cause changes to fail if the modules > 256	2021-04-07 18:26:08 -05:00
Edmund Miller	c6f676e86f	ci: Check that number of jobs is less than 256	2021-04-07 18:26:05 -05:00
Edmund Miller	6e4b23a1ca	ci: Upload work directory on failure (#388) ... Closes #374	2021-03-25 09:34:19 +00:00
Edmund Miller	1fc4aa260d	ci: Add 21.03.0 version to matrix (#317)	2021-03-22 22:57:59 +00:00
Harshil Patel	9b99b33401	Rename .github/filters.yml -> tests/config/pytest_software.yml (#271) ... * Rename pytest filters.yml * Change filters.yml name * Update resoures for ivar trim	2021-03-15 12:51:30 +00:00
Gregor Sturm	38349417ad	Update .github/workflows/pytest-workflow.yml ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-23 14:14:29 +01:00
Gregor Sturm	94bdc62123	Only use one thread for pytest-workflow ... This avoids a race condition on the conda cache.	2021-02-23 14:06:52 +01:00
drpatelh	418bd64e80	Test module with Conda	2021-02-07 21:33:42 +00:00
Edmund Miller	05c09429a3	ci: Fix artifact path ... Had to change it for singularity	2021-02-04 08:45:34 -06:00
Edmund Miller	6fe7b48b5b	Revert "Run alllll the testsgit add .github/workflows/pytest-workflow.yml" ... This reverts commit ffc218e51b.	2021-02-03 20:08:11 -06:00
drpatelh	ffc218e51b	Run alllll the testsgit add .github/workflows/pytest-workflow.yml	2021-02-03 20:03:45 -06:00
drpatelh	0c88ff7458	Upgrade Singularity and change TMPDIR for pytest output	2021-02-03 20:03:43 -06:00
drpatelh	3968c18fd7	Only run Docker tests	2021-02-03 14:04:58 +00:00
drpatelh	9e44b0f4f2	Add conda clean step to action	2021-02-03 12:57:55 +00:00
drpatelh	49fecaa4f0	Switch channel order	2021-02-03 12:07:39 +00:00
drpatelh	d783e2d535	Only test Docker and Conda	2021-02-03 09:02:12 +00:00
Edmund Miller	54bb0ae7a1	ci: Name logs	2021-02-02 17:51:20 -06:00
Edmund Miller	42b8962320	ci: Add bioconda channels	2021-02-02 17:13:35 -06:00
Edmund Miller	0813e61c01	ci: Kick off all container types	2021-02-02 17:08:10 -06:00
Edmund Miller	725de25ce4	Revert "ci: Only test docker for now" ... This reverts commit c63ba06777.	2021-02-02 17:03:29 -06:00
Edmund Miller	c63ba06777	ci: Only test docker for now ... I can't access the artifacts.	2021-02-02 16:49:03 -06:00
Edmund Miller	bb3196ddeb	ci: Update name to use matrix	2021-02-02 16:49:03 -06:00
Edmund Miller	dcfd1089e5	ci: Add --keep-workflow-wd-on-fail	2021-02-02 16:49:03 -06:00
Edmund Miller	983b024010	ci: Use ubuntu-20.04 for singularity	2021-02-02 16:49:02 -06:00
Edmund Miller	8cd6e41df9	ci: Change singularity version 3.6.4 => 3.5.3 ... Per @grst having issues after 3.6	2021-02-02 16:49:02 -06:00
Edmund Miller	bf2e027fdf	ci: Remove conda to kickoff CI	2021-02-02 16:48:58 -06:00
Edmund Miller	1e9aad430d	ci: Remove ${{}} for style points ... It's not necessary in if statements	2021-02-02 15:40:30 -06:00
Edmund Miller	654c6225f0	ci: Setup multiple profiles for testing ... Added conda and singularity	2021-02-02 15:38:51 -06:00
Edmund Miller	341fa43ae3	ci: Add PROFILE ahead of pytest run	2021-02-02 13:07:58 -06:00
Edmund Miller	ce2a5b32f5	refactor: Move away from composite-action	2021-02-02 12:21:36 -06:00
Edmund Miller	6da00a8a1b	ci: Put python setup before cache ... 34cf8a3e0f	2021-01-24 11:38:29 -06:00
Edmund Miller	c7262e27d8	ci: Cache nextflow	2021-01-24 11:35:24 -06:00
Edmund Miller	73b572eede	ci: Cache pip	2021-01-24 11:25:13 -06:00
Edmund Miller	b048bf33e0	ci: Check to see if it's an example array	2021-01-24 11:14:48 -06:00
Edmund Miller	7a89902657	ci: Fix check for no checks ... https://github.community/t/needs-job-outputs-issue/149156 https://github.community/t/jobs-being-skipped-while-using-both-needs-and-if-unclear-why/18480	2021-01-24 10:34:40 -06:00
Edmund Miller	b008afe2e6	ci(#119): Upload logs on failure	2021-01-24 10:33:45 -06:00
Edmund Miller	13539e1c1a	ci: Change name of pytest step	2021-01-24 10:33:45 -06:00
Edmund Miller	860a49d456	ci: Need to wrap matrix's in []	2021-01-24 10:33:45 -06:00
Edmund Miller	0f1016e4a3	ci: Remove any filter	2021-01-24 10:33:45 -06:00
Edmund Miller	9577f5dd64	ci: Reference output rather than a step ... The step wasn't there	2021-01-24 10:33:45 -06:00
Edmund Miller	939b1490b7	ci: Check if there's a change to anything	2021-01-24 10:33:45 -06:00
Edmund Miller	3aaacdde09	ci: Checkout code before looking for changes	2021-01-24 10:33:44 -06:00
Edmund Miller	f4316480c5	ci: Use paths-filter to make one CI test	2021-01-24 10:33:44 -06:00
Edmund Miller	474a6fad64	ci: Add python setup ... Cause apparently you can use an action inside of an action. Yet.	2021-01-24 10:33:44 -06:00
Edmund Miller	d00bd5f6b1	ci: v0.1 => master ... Living life on the edge	2021-01-24 10:33:44 -06:00
Edmund Miller	95270092b0	ci: Add universal CI Test	2021-01-24 10:33:44 -06:00