millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity
2421 commits 30 branches 0 tags 142 MiB
Commit graph

2421 commits

This branch
This branch
All branches
Author SHA1 Message Date
Rike
da79396f06 rename aligned to alignment 2022-05-09 16:07:49 +02:00
Rike
5bd456e5e8 rename file_type to output extension 2022-05-09 16:06:22 +02:00
Rike
1de1c2253e Combine output after code review 2022-05-09 16:04:58 +02:00
Rike
24d5e7feed Code review suggestions 2022-05-09 15:42:55 +02:00
Rike
ef5f145342 Generalize Bam2Cram do either conversion 2022-05-09 15:22:54 +02:00
FriederikeHanssen
52a62c238b
Merge branch 'nf-core:master' into master 2022-05-09 15:05:58 +02:00
Jasmin F
6b8e7ea8e3
Merge pull request #1637 from jasmezz/test_data_bacteroides 
Update test_data.config: Add Bacteroides fragilis GFF file
 2022-05-09 14:59:15 +02:00
Jasmin F
453d5b66a4
Add Bacteroides fragilis GFF file 2022-05-09 14:46:18 +02:00
Harshil Patel
eb084d1dc0
Merge pull request #1626 from mahesh-panchal/meryl_count 
Meryl Count
 2022-05-09 12:21:09 +01:00
Mahesh Binzer-Panchal
a43bc940d6 Add suggestions from code review 2022-05-09 11:15:14 +00:00
Mahesh Binzer-Panchal
32b0fdc9d9
Merge branch 'master' into meryl_count 2022-05-09 10:05:28 +02:00
Mahesh Binzer-Panchal
9ebeb6a702 Update test 2022-05-09 08:05:07 +00:00
Lucpen
38d4f81d20
Merge pull request #1623 from nf-core/correcting_stubs 
fix added correct entry workflow in test.yml
 2022-05-09 10:02:56 +02:00
Mahesh Binzer-Panchal
4591ea2205 atomize 2022-05-09 07:58:58 +00:00
Lucpen
bdaed264a7
Merge branch 'master' into correcting_stubs 2022-05-09 08:54:22 +02:00
Maxime U. Garcia
9cfa06878e
Merge pull request #1629 from maxulysse/master_typos 
fix typos and spacing
 2022-05-08 12:23:23 +02:00
MaxUlysse
3d428e2933 fix spacing 2022-05-07 15:28:40 +02:00
MaxUlysse
1013be2623 fix path to script 2022-05-07 15:22:52 +02:00
Jose Espinosa-Carrasco
2c5ecc87ed
Merge pull request #1628 from nf-core/maxulysse-patch-1 
add missing file
 2022-05-06 23:54:04 +02:00
Jose Espinosa-Carrasco
e2acf28c8f
Merge branch 'master' into maxulysse-patch-1 2022-05-06 23:53:27 +02:00
Harshil Patel
e36489d9e4
Merge pull request #1627 from nf-core/fix-prefetch 
Use a template to add retrying to prefetch
 2022-05-06 19:43:43 +01:00
Harshil Patel
2676f8eef4
Merge branch 'master' into fix-prefetch 2022-05-06 19:33:44 +01:00
Matthias De Smet
b6dd8d2854
Merge pull request #1622 from matthdsm/update/snapaligner 2022-05-06 19:34:09 +02:00
Matthias De Smet
0752b82c9f
Merge branch 'master' into update/snapaligner 2022-05-06 18:57:37 +02:00
Matthias De Smet
dd458e3388 fix tags 2022-05-06 18:57:17 +02:00
Maxime U. Garcia
ac217479e9
Update tests/config/test_data.config 
Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
 2022-05-06 18:18:32 +02:00
Maxime U. Garcia
ec7b460fa4
add missing file 2022-05-06 17:54:35 +02:00
Moritz E. Beber
ea41c753c0 fix: remove retry label 
Call gets retried by bash script
 2022-05-06 17:28:56 +02:00
Moritz E. Beber
dd1c66783a refactor: use a template to add retrying 2022-05-06 17:26:41 +02:00
Moritz E. Beber
ed09978222 chore: update build number 2022-05-06 17:26:41 +02:00
Mahesh Binzer-Panchal
67481c6d54 Start Meryl count 2022-05-06 15:04:04 +00:00
Sateesh Peri
e13d634764
Merge pull request #1239 from priyanka-surana/busco 
Busco
 2022-05-06 10:11:42 -04:00
Lucpen
8e5fda3b10
Merge branch 'master' into correcting_stubs 2022-05-06 15:37:08 +02:00
Lucpen
971a17a3ab fix datatest for stubs 2022-05-06 15:34:18 +02:00
Mahesh Binzer-Panchal
7a85760d08 remove 'auto' test 2022-05-06 13:33:27 +00:00
Lucpen
0fa36e6777 fix added correct entry workflow in test.yml 2022-05-06 15:26:34 +02:00
Matthias De Smet
26d2231e85 fix linting 2022-05-06 14:16:38 +02:00
Matthias De Smet
3930ba227b merge snapaligner modes into one 2022-05-06 14:10:44 +02:00
Mahesh Binzer-Panchal
9fa6b6c1fc Update meta.yml 2022-05-06 11:56:43 +00:00
Mahesh Binzer-Panchal
a9f23bb477
Merge branch 'master' into busco 2022-05-06 13:49:01 +02:00
Mahesh Binzer-Panchal
35c5828f43 Add --auto-lineage option and remove single_end 
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
 2022-05-06 11:48:21 +00:00
Jose Espinosa-Carrasco
56e9e6b921
Merge pull request #1619 from matthdsm/modules/md5sum 
new modules : md5sum / sha256sum
 2022-05-06 12:37:49 +02:00
Jose Espinosa-Carrasco
035655e35d
Merge branch 'master' into modules/md5sum 2022-05-06 12:34:14 +02:00
Ramprasad Neethiraj
2ad7cb8a49
Merge pull request #1617 from ramprasadn/feat/update_cnvpytor 
Cnvpytor - merging calls from multiple samples
 2022-05-06 12:03:49 +02:00
Ramprasad Neethiraj
e639b1e455
Merge branch 'master' into feat/update_cnvpytor 2022-05-06 12:03:12 +02:00
Ramprasad Neethiraj
77209d0866
Merge pull request #1618 from ramprasadn/feat/update_svdb 
update svdb version
 2022-05-06 11:48:22 +02:00
Matthias De Smet
bd1b80f36e fix software definitions 2022-05-06 11:07:05 +02:00
Ramprasad Neethiraj
1ccea5ff4d remove prefix def in callcnvs 2022-05-06 10:56:58 +02:00
Matthias De Smet
1c7205d683 fixed container definitions 2022-05-06 10:44:51 +02:00
Matthias De Smet
77d825e043 fix copy paste errors 2022-05-06 10:39:13 +02:00