Phil Ewels
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dce77ce3f1
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Merge branch 'master' of github.com:nf-core/modules
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2020-07-11 13:08:33 +02:00 |
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Phil Ewels
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21711813c1
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Merge pull request #18 from annacprice/shovill
initial commit of shovill
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2020-07-11 13:00:43 +02:00 |
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Harshil Patel
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f422384e4d
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Merge pull request #13 from MaxUlysse/dev
Add social preview image
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2020-07-10 11:34:30 +01:00 |
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Alexander Peltzer
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9dee710b04
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Merge pull request #25 from piotr-faba-ardigen/add_cutadapt_tool
Add cutadapt tool
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2020-03-16 18:46:00 +01:00 |
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Harshil Patel
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7738dbe4df
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Merge pull request #26 from nf-core/readme-update-modules
Propose module organization
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2020-03-16 14:49:24 +00:00 |
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Harshil Patel
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5e71d61f27
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Update README.md
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2020-03-16 14:47:20 +00:00 |
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Harshil Patel
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d553406fa5
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Update README.md
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2020-03-16 14:47:11 +00:00 |
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Harshil Patel
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300e89c4dc
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Update README.md
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2020-03-16 14:47:03 +00:00 |
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Alexander Peltzer
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95d57bcef2
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Apply suggestions from code review
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
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2020-03-16 15:42:52 +01:00 |
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Alexander Peltzer
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771e53625b
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Update README.md
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2020-03-16 14:42:22 +01:00 |
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Alexander Peltzer
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05b4bbe8a1
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Update README.md
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2020-03-16 14:39:27 +01:00 |
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Alexander Peltzer
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f091e174c0
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Update README.md
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2020-03-16 14:37:07 +01:00 |
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Alexander Peltzer
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9753e803e0
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Update README.md
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2020-03-16 14:27:08 +01:00 |
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Alexander Peltzer
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4303ec700c
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Propose module organization
See above changes to readme :_)
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2020-03-16 14:06:03 +01:00 |
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Piotr Faba
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6fd86ad9e5
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2 tests
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2020-03-06 14:56:33 +00:00 |
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Piotr Faba
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fa134a1196
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fix path error
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2020-03-06 14:54:26 +00:00 |
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Piotr Faba
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2646e55e2b
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get test working
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2020-03-06 14:50:29 +00:00 |
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Piotr Faba
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660be04708
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fix test
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2020-03-06 14:41:37 +00:00 |
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Piotr Faba
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36cad50593
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test submodules checkout
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2020-03-06 14:38:49 +00:00 |
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Piotr Faba
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977a9b3ee8
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test fix
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2020-03-06 14:34:34 +00:00 |
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Phil Ewels
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c8ceddfe77
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Tidying, add samtools and trim_galore
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2020-03-06 14:33:48 +00:00 |
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Piotr Faba
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f33dd2d2e9
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add ci test
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2020-03-06 14:31:44 +00:00 |
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Piotr Faba
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c90474202c
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update meta
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2020-03-06 14:23:32 +00:00 |
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Phil Ewels
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198e9a85eb
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FastQC: add dockerfile and environment.yml
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2020-03-06 14:04:18 +00:00 |
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Piotr Faba
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1c941ef8d6
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Update test-data commit and references
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2020-03-06 13:59:14 +00:00 |
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Piotr Faba
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490eca706c
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single and paired end supported
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2020-03-06 13:23:12 +00:00 |
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Phil Ewels
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b3cc751e78
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Build tool docker images: first attempt
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2020-03-06 11:54:09 +00:00 |
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Piotr Faba
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88bc7dcdd8
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the module is working in test
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2020-03-06 10:51:46 +00:00 |
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Piotr Faba
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97d9ae76f0
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add cutadapt module
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2020-03-05 15:56:11 +00:00 |
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annacprice
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e623dca3b7
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initial commit of shovill
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2020-03-05 09:29:23 +00:00 |
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MaxUlysse
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3e8475baf0
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add social preview image
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2020-02-12 15:27:56 +01:00 |
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Maxime Garcia
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f62fad63ca
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Merge pull request #12 from MaxUlysse/dev
Add some modules
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2020-02-10 17:10:35 +01:00 |
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Maxime Garcia
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48be154434
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Update tools/bwa/index/meta.yml
Co-Authored-By: Olga Botvinnik <olga.botvinnik@gmail.com>
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2020-01-24 10:39:52 +01:00 |
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MaxUlysse
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7fbfd2d6cb
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add samtools faidx to index fasta file
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2020-01-23 11:36:21 +01:00 |
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MaxUlysse
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b8dda67338
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add htslib tabix to index bgzipped vcf files
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2020-01-23 11:35:49 +01:00 |
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MaxUlysse
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9db873c3bc
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add gatk dict to create dictionnary from fasta file
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2020-01-23 11:35:19 +01:00 |
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MaxUlysse
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a69aebd01b
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fix index process
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2020-01-23 10:19:00 +01:00 |
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MaxUlysse
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ad3c14a964
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fix typo
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2020-01-21 11:25:13 +01:00 |
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MaxUlysse
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1f46499e3b
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add bwa index
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2020-01-21 11:24:32 +01:00 |
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Phil Ewels
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a88b867498
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Merge pull request #10 from ewels/master
Fix trim galore process name
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2019-12-06 11:24:45 +01:00 |
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Phil Ewels
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5fbde1c69d
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Fix trim galore process name
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2019-12-06 11:24:07 +01:00 |
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Phil Ewels
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4eb1428931
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Added empty test_import.nf file
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2019-12-06 10:38:57 +01:00 |
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Maxime Garcia
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9fd356468d
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Merge pull request #9 from ewels/master
Added samtools, restructured directory structures
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2019-12-06 10:37:42 +01:00 |
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Phil Ewels
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c77ea13d35
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Fixed FastQC tests with submodule
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2019-12-06 10:15:49 +01:00 |
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Phil Ewels
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93f7b26aa2
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Use submodules for test data
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2019-12-06 09:24:33 +01:00 |
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Phil Ewels
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36df850298
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Added test-datasets as a git submodule
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2019-12-06 09:19:00 +01:00 |
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Phil Ewels
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51bd2c0277
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Ansi log false for tests
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2019-12-05 22:20:02 +01:00 |
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Phil Ewels
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e2a205c8df
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Added nextflow.config files for all
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2019-12-05 22:18:33 +01:00 |
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Phil Ewels
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eb41e5ebba
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FastQC: actually run a test
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2019-12-05 22:11:12 +01:00 |
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Phil Ewels
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ef486a908b
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Use empty dict instead for workflow
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2019-12-05 16:09:28 +01:00 |
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