Carpanzano
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42310cbce2
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updated config to reflect names in test workflow
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2022-05-02 16:14:38 +02:00 |
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Carpanzano
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38d9d81aaf
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update code
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2022-05-02 16:10:57 +02:00 |
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Lucpen
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50cc136a78
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Update tests/modules/gatk4/mutect2/main.nf
fix spelling mistake
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2022-05-02 15:14:05 +02:00 |
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Lucpen
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62c6123ec4
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fix gatk4_mutect2 test by changing main.nf
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2022-05-02 15:11:57 +02:00 |
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JIANHONG OU
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250d64dfde
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fix the typo of motus_downloadb.
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2022-05-02 08:52:54 -04:00 |
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JIANHONG OU
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b14f30936e
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Merge branch 'nf-core:master' into motus_downloaddb
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2022-05-02 08:42:09 -04:00 |
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JIANHONG OU
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31dd31079d
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update teh versions.yml
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2022-05-02 08:41:41 -04:00 |
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jasmezz
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0fc352188b
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Fix conda antismash path
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2022-05-02 14:40:35 +02:00 |
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JIANHONG OU
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0f24e4dcff
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add input database and intermediate bam file.
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2022-05-02 08:37:12 -04:00 |
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Jasmin F
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5cd517e759
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Apply suggestions from code review
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-02 14:31:40 +02:00 |
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Lucpen
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dfabf960dc
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Merge branch 'master' into adding_stub_to_modules
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2022-05-02 14:20:03 +02:00 |
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JIANHONG OU
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f1e4591468
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Merge branch 'motus_downloaddb' of github.com:jianhong/modules into motus_downloaddb
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2022-05-02 08:19:16 -04:00 |
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JIANHONG OU
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3f07761da5
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remove the output check for the versions.yml.
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2022-05-02 08:19:13 -04:00 |
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ljmesi
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ed4dd1a928
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Add additional handling of fq.gz file name suffix
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2022-05-02 14:16:12 +02:00 |
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Lucpen
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da82e06354
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fix gatk4_mutect2 test
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2022-05-02 14:16:07 +02:00 |
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James A. Fellows Yates
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92efb83ec8
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Merge pull request #1595 from jfy133/diamond-update
Standardise DIAMOND output channels and md5sum
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2022-05-02 13:43:56 +02:00 |
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Lucpen
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3a4e415fe2
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chores adding dummy files for stubs
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2022-05-02 13:30:18 +02:00 |
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James A. Fellows Yates
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f1c2f624eb
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Update tests/modules/diamond/blastx/main.nf
Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
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2022-05-02 13:17:22 +02:00 |
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Lucpen
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de40c1bf54
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chore removing file from test
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2022-05-02 13:15:01 +02:00 |
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Lucpen
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f231291e77
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fix gatk4_reversam test
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2022-05-02 12:58:12 +02:00 |
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James A. Fellows Yates
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575258332a
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Merge branch 'master' into diamond-update
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2022-05-02 12:41:37 +02:00 |
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James Fellows Yates
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bd3bfe0817
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Add warn of default being used
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2022-05-02 12:41:24 +02:00 |
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James Fellows Yates
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67b074382e
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Fix tests
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2022-05-02 12:29:00 +02:00 |
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Lucpen
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08d5acbeb6
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feat added tests for stubs
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2022-05-02 11:59:08 +02:00 |
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James Fellows Yates
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58e5c6aece
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Make variables consistent
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2022-05-02 11:55:43 +02:00 |
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Maxime U. Garcia
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0b01607659
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Merge pull request #1597 from praveenraj2018/optional_bai_MarkDup
Changed BAI as optional output
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2022-05-02 11:46:19 +02:00 |
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James Fellows Yates
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375b706a4f
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Merge branch 'diamond-update' of github.com:jfy133/nf-core-modules into diamond-update
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2022-05-02 11:39:09 +02:00 |
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James Fellows Yates
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6986975bc0
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Fix output channels allow BLAST table customisation
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2022-05-02 11:39:07 +02:00 |
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Praveen
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0511e7fbbf
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Changed BAI as optional output to handle large genome
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2022-05-02 11:35:15 +02:00 |
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Lucpen
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8a5bcbc325
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fix the stub of gatk4_revertsam
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2022-05-02 11:06:08 +02:00 |
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Matthias De Smet
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bf416f2307
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Merge branch 'master' into vardict-java
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2022-05-02 10:43:47 +02:00 |
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Lucpen
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6b64f9cb6c
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feat added stub to modules
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2022-05-02 10:34:14 +02:00 |
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James A. Fellows Yates
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ebd3cebee5
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Merge branch 'master' into diamond-update
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2022-05-02 09:37:46 +02:00 |
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James Fellows Yates
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996385fb0f
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Remove MD5sumfor DIAMOND DAA file due to occasioanlly variability
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2022-05-02 09:36:34 +02:00 |
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Ramprasad Neethiraj
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9a9f3e97de
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fix md5sums
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2022-05-01 21:51:40 +02:00 |
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Ramprasad Neethiraj
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d2004a2b76
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update cnvpytor
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2022-05-01 21:14:01 +02:00 |
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Harshil Patel
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76ac37c529
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Merge pull request #1592 from jfy133/diamond-update
Bump DIAMOND modules to 2.0.15
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2022-04-29 20:11:26 +01:00 |
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James Fellows Yates
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44ed38beb8
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Merge branch 'diamond-update' of github.com:jfy133/nf-core-modules into diamond-update
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2022-04-29 21:06:09 +02:00 |
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James Fellows Yates
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39530b5ca7
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Bump DIAMOND version to 2.0.15
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2022-04-29 21:05:12 +02:00 |
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Matthias De Smet
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a9e8dbbdec
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Merge pull request #1535 from matthdsm/tool/bamtools-split
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2022-04-29 18:43:44 +02:00 |
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Carpanzano
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41fd2d1557
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modifiche
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2022-04-29 17:52:12 +02:00 |
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Harshil Patel
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4df985a065
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Merge branch 'master' into tool/bamtools-split
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2022-04-29 16:38:59 +01:00 |
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Edmund Miller
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0d8acda00c
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Use issue forms
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2022-04-29 14:35:29 +00:00 |
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Edmund Miller
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a8a4d76a65
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chore: Add container version
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-04-29 14:34:20 +00:00 |
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Edmund Miller
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fb02d6e85f
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chore: add OS version to bug report
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-04-29 14:34:20 +00:00 |
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Edmund Miller
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8bee7d4748
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chore: Add image tag to bug report
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-04-29 14:34:20 +00:00 |
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Edmund Miller
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ef0483586a
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chore: Use forms for feature request
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2022-04-29 14:34:20 +00:00 |
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Edmund Miller
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816803dbe9
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chore: Add checkboxes for bug report
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2022-04-29 14:34:20 +00:00 |
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Edmund Miller
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2da712f6f3
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chore: Use forms for new modules
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2022-04-29 14:34:20 +00:00 |
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Edmund Miller
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cb29ae2187
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chore: Use forms for bug report
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2022-04-29 14:34:20 +00:00 |
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